Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00688 | ATGCTCTTCCAAACATGCACCATTGCCACCAAAAAGTCTTACATTGTGTATCTGGGATCACTTTCTCATGGTTCGAGTACCTCTTCGTTGCATCATCAACGTGTAACAGAGTCTCATTATAATTTATTGGAATTAGTGTCGGGAAGCAAGAACATAGCCGAAGAAGCAATTTCTCACTCATACAACAGACACATCAATGGCTTTGCTGCCATGCTTGATGAAAACCAAGTATCAGAACTTGCAAAATTTCCAGATGTCGTTTCAGTTTTTGAATGTCAAGCAAGAACATTGCACACGACAAGATCATGGAACTTTCTCGGAATGGAAAAACATGAAGGAATTCCTTCGACCTCCATTTGGAACATCGCTCGATTTGGTGGTGATACAATCATAGCTAACTTTGACTCAGGTGTTTGGCCAGAAGCTAAGAGCTTTAGTGATGAAGGGTATGGTCCTATCCCCTCGAGGTGGAAGGGAACTTGTCAAAGTGACTCAGATCCCAACTTCCATTGCAACAAGAAGTTGATTGGAGCAAGATTCTTCAACAAAGGCTATGGTAACCTCAATGCTACCTTCAATTCTCCTAGAGACCAAGAAGGCCATGGAACCCACACTTTATCCATAGCTGGAGGCAATTTCGTATCTGGAGCTAATGTCTTTGACATGGCCAATGGCACTGCCAAAGGAGGTTCACCTCGAGCCCGCATCGCTTCCTACAAGGTATGTTGGCCAGTAGAAGGTCGTCAGTGTTTGGATCCAAATGCCTTAGCTGCCTATGACGCTGCAATCAGCGATGGCGTCGACGTTATCTCGGTTTCCATCGGTGGAGAGCCGAAAGAGTTTCTTAGAGATGCACTCTCTGTAGGAGCCTTCCATGCAGTTCAACATGGCATTGTTGTTGTTTGCTCCGCTGGGAACTTTGGACCGACTCCGGCGACCGTATCAAACGTATCGCCATGGGTTCTAACCGTTGGAGCTAGTACCATCGATCGTGATTTCACAAACTTCGTCGTCCTGGGAAACAAGAAGAAACTCAAGGGAACAAGCTTTTCTTCTAAAGCATTGGCATTCAACAAGTTCTATCCTTTAATCAATGCTGTGGATGCCAAAGCCAACAATGCCTCTAGCAGTGATGCGGAAGTTTGTAATGAGAGATCGCTTGATCCCACAAAGCTGGCAGGGAAAATTGTGGTTTGCCTTCGAGGGGTCATTTCAAGAGTGTCAAAGGGCTATGTAGTGGCCCAAGCAGGGGCTGCTGGCATGATTTTGGTTAACGATAAGGACAATGGGGATGCCATTGCCACTGATCTGCATCTCCTCCCAGCTTCCCATGTAACCTTCAATGACGGCATATCCATCTTCCATTACATCAAATCTACGAAGACACCAATGGCTTGCATCAGTTCAGTGAAGACAGAATTAGATGTAAATCCATCGCCAGTAATGGCAGATTTCTCATCGAGAGGCCCCAGTACAATCGAGGGGTCCATCCTTAAGCCTGACATTACAGCACCAGGTGTGAATATAATAGCGGCTTACCCGGATGAAATACCACTAATAGAATTACAGGTTGACGATCGTCGAGCTCCTTTTAAGGTAGATTCTGGCACATCCATGGCTTGCCCCCATGTTGCTGGCATTGTAGGCCTTCTCAAATCTCGATATCCTAAATGGAGTCCGGCTGCCATTAAATCTGCAATCATGACCACAGCCAAAACAAGCGCCAACAACTTCAATCCAATCCTAGACTTTACCGGACTCGAAGCGACTCCATTGGCATACGGCAACGGACATGTTGACCCAAATAGTGTGATGGATCCTGGCCTCGTTTACGACATTGCAATAGATGATTACCTCAATTTCTTGTGTGCTCGAGGCGACAATGCAACACAAATCAACAAATTATCCCACAAGTTATTTGTCTGCGATCCATCATTCAAAGTAACGGATTTGAATTACCCTTCGATCTCAGTCACGAATCTGAAAACAGGCCCTGTGACGATCAATCGAAAGTTGAAGAACGTGGGAAGTCCAGGGACGTATGTTGCTCAAGTGAAGGCGCCTTTGGAAGTTTCTATCGCGGTTGAGCCAAGTACATTGCAATTTACCGCCATGGATGAAGAGAAGAGCTTCAAGATCGTGTTGCAGAGAAGTGGAAAGGGAAGTCAAGAGGGCTATGCGTTTGGGGAATTAGCATGGTCTGATGGCAAACACAATGTTAGGAGCTCCATTGCTGTTAATTTAGGGAAATAG | 2253 | 45.58 | MLFQTCTIATKKSYIVYLGSLSHGSSTSSLHHQRVTESHYNLLELVSGSKNIAEEAISHSYNRHINGFAAMLDENQVSELAKFPDVVSVFECQARTLHTTRSWNFLGMEKHEGIPSTSIWNIARFGGDTIIANFDSGVWPEAKSFSDEGYGPIPSRWKGTCQSDSDPNFHCNKKLIGARFFNKGYGNLNATFNSPRDQEGHGTHTLSIAGGNFVSGANVFDMANGTAKGGSPRARIASYKVCWPVEGRQCLDPNALAAYDAAISDGVDVISVSIGGEPKEFLRDALSVGAFHAVQHGIVVVCSAGNFGPTPATVSNVSPWVLTVGASTIDRDFTNFVVLGNKKKLKGTSFSSKALAFNKFYPLINAVDAKANNASSSDAEVCNERSLDPTKLAGKIVVCLRGVISRVSKGYVVAQAGAAGMILVNDKDNGDAIATDLHLLPASHVTFNDGISIFHYIKSTKTPMACISSVKTELDVNPSPVMADFSSRGPSTIEGSILKPDITAPGVNIIAAYPDEIPLIELQVDDRRAPFKVDSGTSMACPHVAGIVGLLKSRYPKWSPAAIKSAIMTTAKTSANNFNPILDFTGLEATPLAYGNGHVDPNSVMDPGLVYDIAIDDYLNFLCARGDNATQINKLSHKLFVCDPSFKVTDLNYPSISVTNLKTGPVTINRKLKNVGSPGTYVAQVKAPLEVSIAVEPSTLQFTAMDEEKSFKIVLQRSGKGSQEGYAFGELAWSDGKHNVRSSIAVNLGK | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3437968 | 3441561 | + | CmaCh06G006880.1 | Cma06g00688 | 296242 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00688 | 750 | CDD | PA_subtilisin_like | 337 | 465 | - | - | |
| Cma06g00688 | 750 | Pfam | Fibronectin type-III domain | 650 | 746 | IPR041469 | - | |
| Cma06g00688 | 750 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 12 | 749 | IPR045051 | - | |
| Cma06g00688 | 750 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 536 | 546 | IPR023828 | - | |
| Cma06g00688 | 750 | Pfam | PA domain | 372 | 450 | IPR003137 | - | |
| Cma06g00688 | 750 | SUPERFAMILY | Subtilisin-like | 97 | 609 | IPR036852 | GO:0004252|GO:0006508 | |
| Cma06g00688 | 750 | SUPERFAMILY | Protease propeptides/inhibitors | 12 | 91 | - | - | |
| Cma06g00688 | 750 | Pfam | Subtilase family | 128 | 574 | IPR000209 | GO:0006508|GO:0008236 | |
| Cma06g00688 | 750 | SUPERFAMILY | PA domain | 387 | 460 | IPR046450 | - | |
| Cma06g00688 | 750 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 3 | 98 | IPR037045 | - | |
| Cma06g00688 | 750 | Gene3D | - | 330 | 474 | - | - | |
| Cma06g00688 | 750 | Gene3D | - | 622 | 748 | - | - | |
| Cma06g00688 | 750 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 12 | 749 | - | - | |
| Cma06g00688 | 750 | CDD | Peptidases_S8_3 | 96 | 571 | IPR034197 | - | |
| Cma06g00688 | 750 | Gene3D | Peptidase S8/S53 domain | 128 | 618 | IPR036852 | GO:0004252|GO:0006508 | |
| Cma06g00688 | 750 | Pfam | Peptidase inhibitor I9 | 13 | 97 | IPR010259 | - | |
| Cma06g00688 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 535 | 551 | IPR015500 | - | |
| Cma06g00688 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 197 | 210 | IPR015500 | - | |
| Cma06g00688 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 126 | 145 | IPR015500 | - | |
| Cma06g00688 | 750 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 102 | 605 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00688 | Cma-Chr6:3437968 | Cma06g00693 | Cma-Chr6:3478009 | 0 | dispersed | |
| Cma06g00688 | Cma-Chr6:3437968 | Cma06g00691 | Cma-Chr6:3464091 | 0 | proximal | |
| Cma16g00976 | Cma-Chr16:7523164 | Cma06g00688 | Cma-Chr6:3437968 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00688 | - | - | cmo:103491006 | 1053.12 |