Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00700 | ATGGGGAGGACTGATGATAACGTTGCTATAATTGGGGATTGGGTACCTCCAAGTCCCAGTACACGAGCCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTATCACCATTGATAAAACTGAAGAGCTATTTCAAAGGCCTCGAGAACATCCGATATCAAACAACACCGTTGCAAGAGGCGGGATCCCGAGTGCCAATTCTGGTGATCGGTCGATGGATTTAAGTTCGTTTTCGGGGCAGAAATTCCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACGGAGAGTATTAGATCCACTGATCAATCTCTGGATTCAGATGCCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCTACTACATTGCTAGATTCACCTGTTTTTCTTTCTAATTCACTGGCACAGCAATCTCCCACAACTGGAAAGTTCCCGTTCTTGCCGAATGTTAGTAATCGGAGCTCGATGATGATGTCGGAGGGCGACAATAAAGGCAGCGACAGTCCATTCAACAATAACAGTACATCGTTTGCATTCAGTTCTGGTGTGGAATCTGGATCGTTCTTTTATCTCGGTGCAGCAAGCAAAACAGATTCTGCCACTGTTCTTCCACATTCTTGTCCAAGAATTGAGGTTTCAGTTCCACGTTCAGAAAATTCTTTTCAGTCTCATCTTGTAGAACCATCTCTGTCTTTACCTCAAAGCAGAATCAGTCATCATCCACAAGTGGGACTCTCTACGTCATGCGTCGAGAGGGATGATGTGGGTAAGACCGTGTCAGATGATCAAAGAACCTTTGATTCTTTGTGTGGTGGTGGTGAACATTCATCACCACTCGATGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTAGTGGCGCTCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTACCCTCGTAGTTATTATAAGTGCACGCATCCAAACTGTCAGGTCAAGAAAAAAGTCGAGCGATCTAATGAGGGTCATATAACAGAGATCATCTATAAAGGAACACATAATCACCCAAAGCCCTCGCCCTATCGACGAGCAGCAACCGGACCTTCGGATTCCCATATCAATATGCAACTAGACATCTCTGCACAAGGTGGCCAACAGACTGCTGAAGGTCTCCTTTGGGGAGATTCACAAAAACGGATTCCAAATGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCAGCCGTGGGTCCTGAATATGGCAATCAGCCTAATAGTTTACAGGCTCAAAATGGCAGTCATGTTGAAACAGTTGAAGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGCACCCATGGCAGTGTAACATTGGGATATGAGGGGGAAGGAGATGAGTCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACGGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTCGTGCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGCTGGCGCAAATACGGGCAGAAGGTTGTAAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATCACGACATACGAAGGAAAGCACAACCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTAGTACATCCAGTCCAGTAACCACACAAAACTTGACCGCAACGACTCAAACTCATATTCACAGGCCGGGGCCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCAGGGTTTAGCCTTCCTGGAAGACAGCAGATGGGCAGTGCCCATGGGTTCTCTTTTGGAATGAACCAACCTGGACTGAGAAATCTGGCAATGGCAGCCGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCGCACCATGTTAACGACATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGACCTTGGCTTGAACTTTTCCCATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2223 | 47.05 | MGRTDDNVAIIGDWVPPSPSTRAFFSAMLGEDVGSRPAMDTITIDKTEELFQRPREHPISNNTVARGGIPSANSGDRSMDLSSFSGQKFRGGLVERIAARAGFNAPRLNTESIRSTDQSLDSDAKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSSMMMSEGDNKGSDSPFNNNSTSFAFSSGVESGSFFYLGAASKTDSATVLPHSCPRIEVSVPRSENSFQSHLVEPSLSLPQSRISHHPQVGLSTSCVERDDVGKTVSDDQRTFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGSGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSNEGHITEIIYKGTHNHPKPSPYRRAATGPSDSHINMQLDISAQGGQQTAEGLLWGDSQKRIPNGAPDWMHENLEVTSSAAVGPEYGNQPNSLQAQNGSHVETVEAIDASSTFSNDEDEDDRGTHGSVTLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSSTSSPVTTQNLTATTQTHIHRPGPPQPQNTIPRFERPGFSLPGRQQMGSAHGFSFGMNQPGLRNLAMAAVGQAKLPVLPMHPYLAQAHHVNDMGFLLPKGEPNVEPTSDLGLNFSHGSTVYQQIMSRLPLGPEM | 740 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3513185 | 3516840 | + | CmaCh06G007000.1 | Cma06g00700 | 296254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00700 | 740 | SUPERFAMILY | WRKY DNA-binding domain | 528 | 596 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | MobiDBLite | consensus disorder prediction | 590 | 613 | - | - | |
Cma06g00700 | 740 | Gene3D | WRKY domain | 523 | 589 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
Cma06g00700 | 740 | MobiDBLite | consensus disorder prediction | 598 | 613 | - | - | |
Cma06g00700 | 740 | Pfam | WRKY DNA -binding domain | 537 | 593 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | Pfam | WRKY DNA -binding domain | 322 | 378 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | Gene3D | WRKY domain | 315 | 381 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | MobiDBLite | consensus disorder prediction | 274 | 327 | - | - | |
Cma06g00700 | 740 | SMART | WRKY_cls | 536 | 595 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | SMART | WRKY_cls | 321 | 379 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | ProSiteProfiles | WRKY domain profile. | 316 | 380 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | MobiDBLite | consensus disorder prediction | 471 | 504 | - | - | |
Cma06g00700 | 740 | ProSiteProfiles | WRKY domain profile. | 531 | 596 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | SUPERFAMILY | WRKY DNA-binding domain | 320 | 380 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00700 | 740 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 107 | 692 | IPR044810 | GO:0003700 | |
Cma06g00700 | 740 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 107 | 692 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00700 | Cma-Chr6:3513185 | Cma10g00833 | Cma-Chr10:3895566 | 1.90E-112 | dispersed | |
Cma16g00995 | Cma-Chr16:7656778 | Cma06g00700 | Cma-Chr6:3513185 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35199 | PF03106 | WRKY | 3.00E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00700 | K18835 | - | csv:101207853 | 1206.82 |