Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00700 ATGGGGAGGACTGATGATAACGTTGCTATAATTGGGGATTGGGTACCTCCAAGTCCCAGTACACGAGCCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTATCACCATTGATAAAACTGAAGAGCTATTTCAAAGGCCTCGAGAACATCCGATATCAAACAACACCGTTGCAAGAGGCGGGATCCCGAGTGCCAATTCTGGTGATCGGTCGATGGATTTAAGTTCGTTTTCGGGGCAGAAATTCCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACGGAGAGTATTAGATCCACTGATCAATCTCTGGATTCAGATGCCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCTACTACATTGCTAGATTCACCTGTTTTTCTTTCTAATTCACTGGCACAGCAATCTCCCACAACTGGAAAGTTCCCGTTCTTGCCGAATGTTAGTAATCGGAGCTCGATGATGATGTCGGAGGGCGACAATAAAGGCAGCGACAGTCCATTCAACAATAACAGTACATCGTTTGCATTCAGTTCTGGTGTGGAATCTGGATCGTTCTTTTATCTCGGTGCAGCAAGCAAAACAGATTCTGCCACTGTTCTTCCACATTCTTGTCCAAGAATTGAGGTTTCAGTTCCACGTTCAGAAAATTCTTTTCAGTCTCATCTTGTAGAACCATCTCTGTCTTTACCTCAAAGCAGAATCAGTCATCATCCACAAGTGGGACTCTCTACGTCATGCGTCGAGAGGGATGATGTGGGTAAGACCGTGTCAGATGATCAAAGAACCTTTGATTCTTTGTGTGGTGGTGGTGAACATTCATCACCACTCGATGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTAGTGGCGCTCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTACCCTCGTAGTTATTATAAGTGCACGCATCCAAACTGTCAGGTCAAGAAAAAAGTCGAGCGATCTAATGAGGGTCATATAACAGAGATCATCTATAAAGGAACACATAATCACCCAAAGCCCTCGCCCTATCGACGAGCAGCAACCGGACCTTCGGATTCCCATATCAATATGCAACTAGACATCTCTGCACAAGGTGGCCAACAGACTGCTGAAGGTCTCCTTTGGGGAGATTCACAAAAACGGATTCCAAATGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCAGCCGTGGGTCCTGAATATGGCAATCAGCCTAATAGTTTACAGGCTCAAAATGGCAGTCATGTTGAAACAGTTGAAGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGCACCCATGGCAGTGTAACATTGGGATATGAGGGGGAAGGAGATGAGTCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACGGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTCGTGCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGCTGGCGCAAATACGGGCAGAAGGTTGTAAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATCACGACATACGAAGGAAAGCACAACCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTAGTACATCCAGTCCAGTAACCACACAAAACTTGACCGCAACGACTCAAACTCATATTCACAGGCCGGGGCCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCAGGGTTTAGCCTTCCTGGAAGACAGCAGATGGGCAGTGCCCATGGGTTCTCTTTTGGAATGAACCAACCTGGACTGAGAAATCTGGCAATGGCAGCCGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCGCACCATGTTAACGACATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGACCTTGGCTTGAACTTTTCCCATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2223 47.05 MGRTDDNVAIIGDWVPPSPSTRAFFSAMLGEDVGSRPAMDTITIDKTEELFQRPREHPISNNTVARGGIPSANSGDRSMDLSSFSGQKFRGGLVERIAARAGFNAPRLNTESIRSTDQSLDSDAKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSSMMMSEGDNKGSDSPFNNNSTSFAFSSGVESGSFFYLGAASKTDSATVLPHSCPRIEVSVPRSENSFQSHLVEPSLSLPQSRISHHPQVGLSTSCVERDDVGKTVSDDQRTFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGSGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSNEGHITEIIYKGTHNHPKPSPYRRAATGPSDSHINMQLDISAQGGQQTAEGLLWGDSQKRIPNGAPDWMHENLEVTSSAAVGPEYGNQPNSLQAQNGSHVETVEAIDASSTFSNDEDEDDRGTHGSVTLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSSTSSPVTTQNLTATTQTHIHRPGPPQPQNTIPRFERPGFSLPGRQQMGSAHGFSFGMNQPGLRNLAMAAVGQAKLPVLPMHPYLAQAHHVNDMGFLLPKGEPNVEPTSDLGLNFSHGSTVYQQIMSRLPLGPEM 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3513185 3516840 + CmaCh06G007000.1 Cma06g00700 296254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00700 740 SUPERFAMILY WRKY DNA-binding domain 528 596 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 MobiDBLite consensus disorder prediction 590 613 - -
Cma06g00700 740 Gene3D WRKY domain 523 589 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 MobiDBLite consensus disorder prediction 59 80 - -
Cma06g00700 740 MobiDBLite consensus disorder prediction 598 613 - -
Cma06g00700 740 Pfam WRKY DNA -binding domain 537 593 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 Gene3D WRKY domain 315 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 MobiDBLite consensus disorder prediction 274 327 - -
Cma06g00700 740 SMART WRKY_cls 536 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 MobiDBLite consensus disorder prediction 471 504 - -
Cma06g00700 740 ProSiteProfiles WRKY domain profile. 531 596 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 SUPERFAMILY WRKY DNA-binding domain 320 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00700 740 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 692 IPR044810 GO:0003700
Cma06g00700 740 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 107 692 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00700 Cma-Chr6:3513185 Cma10g00833 Cma-Chr10:3895566 1.90E-112 dispersed
Cma16g00995 Cma-Chr16:7656778 Cma06g00700 Cma-Chr6:3513185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35199 PF03106 WRKY 3.00E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00700 K18835 - csv:101207853 1206.82