Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00707 ATGGCGATGCCTTCTCGGGAAGCAATTGATACTTTTATCGGCGTCACCGGAGCCTCCGAAGCGATCGCCGTTCAAAAGCTCGAGGCACATGGTGATGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAACGCACATCCGACCTCTGTTTCTGGTGATTATGATTTCATGGACATTGATGATCTAGTTGAAGTTGAACCCCAGGGTCCTCCTCAGTCTCTTCTATCTGCTGCTAGAGAGATTATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGTTTATTTGACCACGCCTCTGATTTTACTAGTTCTGCTCCAATGGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGCCGACCATCTGGCCAATCTGGCCATGTGCTGACAATTGAGGATGTCACTGGGACTGTGGATGCCCATTGTCAAGAGGTTCGTGGGACTGTAGTAATTGATGATAATGAAGATGAAGAACCTCCAGTTGCTTCTGTAGCACATGCACCAGATTTAGAGCATCAGGCTATTGCTAGTCATGATTCTCATGACAGAAATGCTGTATCCGGTGCCTTTGAAAGTGCTGAGTTTCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAAGATGTTGTGCAGGCTTATCCAAGCGATCCCTTAACTACACAAACTGATTTAAGCAATCTTAGGACTCGAGAACATCTTTCTCACTTGAGTGATTTAGAATTATCACCTGCAGCTTCATCTATCAAGCCAGAGGAAGATTTCCCTGAGAGAGGGGAGAACATTGGAGGATCAAAAACAGAAACTTCTAAGTTAACTGATGTGGAACTGAGGAAGGTCACATCATTAAATGGAAGGATGGAAACAGGAAGTACGTCTGCTCAAGATGAGGTTGAAGACCTAGAGGAAGTTAATTTAATTAGGCATCGGTCCAAACGCAAGTCCTCTGGCAATGCTGAGCCTGCAAAGGGGGTTGAAATTGTTGATTTAAGCCTTGCATCAAGTCCCAAGCATCCTGATAGTAGTAATAATCCACAGCACAATGGGAATGCATTTCAGTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGCTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATGTACAGCCAGCCCCTCGCCCTCCTTCACCCTCCTTAGTAGCTCAGCGCTTGATAAGGGAACAGCAGGATGATGAGTATCTGGCAGCTTTAGAAGCTGACAGAGAAAAAGAACTGAAGGCCATGGCTGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAGAGAGAGGAAGAATCTCGTCAGAAACTGGATGCTGAGAAGGAACTTGAAAGACATTTGGCAGAAATAGAGGCTTCTCTTCCCAGTGAACCAAGATCAGATGACGAGAATGCGGTGACACTGTTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAATCTGATAAGCTACAGTGTCTCTTTGACTTCATTGATATCGGTAGAGTTGTCAAGCCTGGTTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGAGTTCCTTAACGTTGAATGAACTTGGAGTTAACAGCAAGCAAGAAGCTTTTTATCTGGAAGGAATTGGGTCTGAAGAAGCTCCCGATCGTCGTCCCGAATCCCCACGCATTGCAGGCCTCCCTGCTGCTCCATCAGCTTCTTCCATTTCTTAA 1863 45.36 MAMPSREAIDTFIGVTGASEAIAVQKLEAHGDDLNAAVNAYFNEGDRSSSVNAHPTSVSGDYDFMDIDDLVEVEPQGPPQSLLSAAREIMNPFSLLDQNLRQGLFDHASDFTSSAPMVTHPREVREIPIEFRDGSRPSGQSGHVLTIEDVTGTVDAHCQEVRGTVVIDDNEDEEPPVASVAHAPDLEHQAIASHDSHDRNAVSGAFESAEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTQTDLSNLRTREHLSHLSDLELSPAASSIKPEEDFPERGENIGGSKTETSKLTDVELRKVTSLNGRMETGSTSAQDEVEDLEEVNLIRHRSKRKSSGNAEPAKGVEIVDLSLASSPKHPDSSNNPQHNGNAFQSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYVQPAPRPPSPSLVAQRLIREQQDDEYLAALEADREKELKAMAEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRSDDENAVTLLVRMPDGSRRGRRFLKSDKLQCLFDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSLTLNELGVNSKQEAFYLEGIGSEEAPDRRPESPRIAGLPAAPSASSIS 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3551820 3558222 + CmaCh06G007070.1 Cma06g00707 296261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00707 620 MobiDBLite consensus disorder prediction 471 490 - -
Cma06g00707 620 Gene3D - 511 591 - -
Cma06g00707 620 Coils Coil 471 498 - -
Cma06g00707 620 CDD UBX 516 579 - -
Cma06g00707 620 SUPERFAMILY Ubiquitin-like 473 581 IPR029071 -
Cma06g00707 620 MobiDBLite consensus disorder prediction 265 290 - -
Cma06g00707 620 MobiDBLite consensus disorder prediction 592 620 - -
Cma06g00707 620 PANTHER FAS-ASSOCIATED PROTEIN 1 592 - -
Cma06g00707 620 Pfam UBX domain 510 583 IPR001012 GO:0005515
Cma06g00707 620 PANTHER OS09G0525600 PROTEIN 1 592 - -
Cma06g00707 620 SMART ubx_3 507 591 IPR001012 GO:0005515
Cma06g00707 620 ProSiteProfiles UBX domain profile. 510 588 IPR001012 GO:0005515
Cma06g00707 620 MobiDBLite consensus disorder prediction 356 389 - -
Cma06g00707 620 MobiDBLite consensus disorder prediction 358 380 - -
Cma06g00707 620 CDD UBA_Ubx1_like 6 42 - -
Cma06g00707 620 Pfam UBA-like domain 6 47 - -
Cma06g00707 620 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cma06g00707 620 Gene3D - 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00707 - - - cmos:111449021 1088.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00707 Cma-Chr6:3551820 Cma13g00873 Cma-Chr13:7120401 5.15E-12 dispersed
Cma16g01003 Cma-Chr16:7729059 Cma06g00707 Cma-Chr6:3551820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00707 Cma_Chr06 FPKM 22.657614 23.477398 38.802639 38.212242 17.676266 16.747356 15.820928 69.977325 68.518105 73.32843
Cma06g00707 Cma_Chr00 FPKM 2.824432 4.476629 2.39881 2.833405 23.027891 29.231745 27.211773 8.331571 7.347812 7.001042