Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00710 | ATGGCCTCTACCTCCTCCAACAAGCATCATCACTACAAGGGAATCCGCTGCCGGAGCGGAAAATGGGTGTCGGAGATTCGAGAGCCCCGTAAGACGACTCGAATATGGCTCGGTACTTACCCTACTCCGGAGATGGCTGCTGCTGCCTACGACGTGGCTGCGCTCGCTCTAAAGGGTTGCAATGCTGTTCTCAACTTCCCCGACTCAATTGGGTCGTACCCGGTTCCAACTTCCATGTCCTCGACTGATATTCGTGTCGCTGCTGCTGCAGCAGCATCTAAAAGGATCGACCATGGAGAAGGAAGTTACAATAGTCACCACCAATCTCCACCAACTGACGAGTTCGTCGACGAAGAGGCGCTTTTTGGAATGCCAAATCTACTTGTTGACATGGCAGAGGGAATGCTGTTGTCGCCACCACGAATTAGCTCATCGCCGTCTCGACATGAGTATTACTCATGGAACTCGAGTGGAGATGGAAATCTATGGAGCTACTATTAG | 501 | 51.7 | MASTSSNKHHHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSIGSYPVPTSMSSTDIRVAAAAAASKRIDHGEGSYNSHHQSPPTDEFVDEEALFGMPNLLVDMAEGMLLSPPRISSSPSRHEYYSWNSSGDGNLWSYY | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3573295 | 3573795 | + | CmaCh06G007100.1 | Cma06g00710 | 296264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00710 | 166 | PANTHER | ETHYLENE RESPONSE FACTOR | 2 | 166 | - | - | |
Cma06g00710 | 166 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00710 | 166 | SUPERFAMILY | DNA-binding domain | 11 | 69 | IPR016177 | GO:0003677 | |
Cma06g00710 | 166 | Pfam | AP2 domain | 11 | 59 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00710 | 166 | SMART | rav1_2 | 11 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00710 | 166 | Gene3D | AP2/ERF domain | 10 | 68 | IPR036955 | GO:0003700|GO:0006355 | |
Cma06g00710 | 166 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00710 | 166 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 2 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00710 | Cma-Chr6:3573295 | Cma16g01011 | Cma-Chr16:7766235 | 1.03E-80 | dispersed | |
Cma15g01198 | Cma-Chr15:7589726 | Cma06g00710 | Cma-Chr6:3573295 | 3.70E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35201 | PF00847 | AP2 | 5.30E-11 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00710 | - | - | csv:101202953 | 263.462 |