Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00710 ATGGCCTCTACCTCCTCCAACAAGCATCATCACTACAAGGGAATCCGCTGCCGGAGCGGAAAATGGGTGTCGGAGATTCGAGAGCCCCGTAAGACGACTCGAATATGGCTCGGTACTTACCCTACTCCGGAGATGGCTGCTGCTGCCTACGACGTGGCTGCGCTCGCTCTAAAGGGTTGCAATGCTGTTCTCAACTTCCCCGACTCAATTGGGTCGTACCCGGTTCCAACTTCCATGTCCTCGACTGATATTCGTGTCGCTGCTGCTGCAGCAGCATCTAAAAGGATCGACCATGGAGAAGGAAGTTACAATAGTCACCACCAATCTCCACCAACTGACGAGTTCGTCGACGAAGAGGCGCTTTTTGGAATGCCAAATCTACTTGTTGACATGGCAGAGGGAATGCTGTTGTCGCCACCACGAATTAGCTCATCGCCGTCTCGACATGAGTATTACTCATGGAACTCGAGTGGAGATGGAAATCTATGGAGCTACTATTAG 501 51.7 MASTSSNKHHHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSIGSYPVPTSMSSTDIRVAAAAAASKRIDHGEGSYNSHHQSPPTDEFVDEEALFGMPNLLVDMAEGMLLSPPRISSSPSRHEYYSWNSSGDGNLWSYY 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3573295 3573795 + CmaCh06G007100.1 Cma06g00710 296264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00710 166 PANTHER ETHYLENE RESPONSE FACTOR 2 166 - -
Cma06g00710 166 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cma06g00710 166 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Cma06g00710 166 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Cma06g00710 166 SMART rav1_2 11 75 IPR001471 GO:0003700|GO:0006355
Cma06g00710 166 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Cma06g00710 166 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Cma06g00710 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00710 Cma-Chr6:3573295 Cma16g01011 Cma-Chr16:7766235 1.03E-80 dispersed
Cma15g01198 Cma-Chr15:7589726 Cma06g00710 Cma-Chr6:3573295 3.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35201 PF00847 AP2 5.30E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00710 - - csv:101202953 263.462