Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00717 ATGCTGATGGCCTCTCATCATTATGAACATCATCATCATCATCAAGAAGAAGAAACCACCTCCTCTTCAAATAATTCCCTCCAAATGCGTCAATTACTCATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTCTCAGCTCATCGCCTTCTCTCAATTCTTTCCTCAAATTCCTCCCCTTATGGCGATGCCACCGAACGATTGCTTCATTATTTCACCACTTCTCTCTCCCATCGCATCCCTTCTTCAAATTCCTCTTCTGTTCTTCCTCTTCCTAGTTTGAGTTCTATTGATGATGAACAACACAAATTGACTCAATCTTGTTATTTATCATTGAATCAAATCACACCCTTTATAAGATTCACCCATTTGACTGCAAATCAAGCCATTTTGGAAGCTATTGTGGAAGGAGGGATTCATGTTGTGGATTTTGATATCATGCATGGTGTTCAATGGCCGCCTCTCATGCAAGCTTTGGCCGAGCGCTTTCCTTCTCCTATGTTGAGGATTTCTGCCATTGGTCGTGACCTTAACTTTCTTCACAAGACTGGTGACCGTCTTTCGAAGTTCGCTCACTCTCTCGGTTTGAGATTTCAATTTCATCCTCTTCTCCTTCTTAATGACCATGATCATCACCGCCTTATCCCCGCCTCTCTTACACTCTTCCCCGATGAAGCTCTCGCCTTTAATTGCGTTCTCTACTTACACAAGCTTGTAAAGGAGGATCTTCAAGTGTTGCTACATAAAATCAAGGCATTGAACCCTAAAGTGGTGACCATTGCTGAAAAGGAAGCGAATTTCAACCACCCTTTATTCATGCAAAGGTTTCTAGAGGCATTGAATCATTATTCTCTAATATTTGACTCATTGGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGACTAGCAGTGGAGCAAGTTTGGTTTGGAAGGGAAATAGACGACGTCGTTTCAAGAGAAGGGAACAAGAGAAAGCAGCGTTATGAGAGGTATGAATCATGGGAGACAATGCTTAAAAGTTTGGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCTCTCTCACAAGCTAAACTCCTTCTAAGGCTTCATTATCCATCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTTCTTGGTTGGCAAAATAGACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1188 41.58 MLMASHHYEHHHHHQEEETTSSSNNSLQMRQLLIRCAHFISQSDFLSAHRLLSILSSNSSPYGDATERLLHYFTTSLSHRIPSSNSSSVLPLPSLSSIDDEQHKLTQSCYLSLNQITPFIRFTHLTANQAILEAIVEGGIHVVDFDIMHGVQWPPLMQALAERFPSPMLRISAIGRDLNFLHKTGDRLSKFAHSLGLRFQFHPLLLLNDHDHHRLIPASLTLFPDEALAFNCVLYLHKLVKEDLQVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVSREGNKRKQRYERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNRPLFSVSSWH 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3606845 3608111 + CmaCh06G007170.1 Cma06g00717 296271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00717 395 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00717 395 PANTHER SCARECROW-LIKE PROTEIN 18 9 395 IPR030017 GO:0005634|GO:0010223
Cma06g00717 395 MobiDBLite consensus disorder prediction 1 19 - -
Cma06g00717 395 Pfam GRAS domain family 29 394 IPR005202 -
Cma06g00717 395 ProSiteProfiles GRAS family profile. 20 395 IPR005202 -
Cma06g00717 395 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 395 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00717 Cma-Chr6:3606845 Cma04g02984 Cma-Chr4:19554944 6.00E-82 dispersed
Cma16g01015 Cma-Chr16:7809251 Cma06g00717 Cma-Chr6:3606845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35202 PF03514 GRAS 2.60E-118 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00717 - - mcha:111020441 623.624