Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00723 ATGGAGCCGGGTTCTTTGTTGCAGCGGTACCTTCGTGACCGGAAAAATCTGCTGGCATTCTTGCTTTCCTCGCGTTTTGTCAGAGAGCTGAGGACTCCGGCAGGTCCTGTCACTGATTTATCCGCCATCGACCTTGACTCTCTGAGCGCTAGCTATGTTTTGGAGTGCATTAAGTCTGGTGGAGTTATTGACATTTCTACAGCTACTAAGAAGAAGCGACATGAATCTTCTTACCCGATAATGATACAATCTCGACTACGGACTTCTTATTTTCTACTTTCTCATCCAGATTTGTCTGGATCACCTCCTAGCCGTGCGCCACCACCACCTAAAATGGTGGAGAGATCCTCTAGTGACATATCGTGTTCATCTAGGTCGCTTGGGTCATCAGTTGATGACAATATTGCAACTTATAGTGATGACTGTGGTCCTCAGTCTAATGGAACAACAGCCACACCTTCGAAACTTGTGAAGGATCTCAAAGTTCCGGCTTTAGGACTACCTAAGTTGTATACAGGACTGACAGATGATGACTTGGATGAAGCAGCATATTTAATCTTGCTTGCATCAATCGCATTTTCTGGGGTTGAAATCTATTCATCTGAGGATAAAAAGAAAGAAAATGGTATTAAACATACTGTAGGGATGACAAGTATAAGGAATGAACTAGATGTTCAATCAGAGAATTTTGAAGGACATTTGAATTTTCTTCACGCTATCCGCACCCAGATGCAGATTTCAGCAATTTCTGATGCATGTATGAGGAAAAGATTAATGGAATTGGATGCAAAGAGAAACTGGGGGCAAATTAATGTTCCTCAAGTTTTGTTGGTCCTCTTGCATGGGGTTTTCAGGTCTGATTTTCCTAGTGAGAAAGCTTATATGCAATGGAAGTTCAGACAGGTCAATCTTTTGGAAGAATTCTGTTACTCTGCTAATCTTGTAGCTTCTGAACGTCAAATCTGTGAAAGTTCTCTTGTGAAGATCAGAAGTACAAAGGAATGGGATATCAATATGGTTCGATCTGAGCGTGCTAAAGTATTGTCAGGTATTGGACAAGTACTGTCGAAGTTGCCAGCTCCCTCTGCTTATCACTTAAACATCAGGTTATATGAGAAATTGATTTTAGGCATATTTGATGTTCTTGACGACAGCCATCCCGTTATGGAAGTGGATGACAGTCTCGTCCTTCTCAAATTGACTTGGTCTGCTTTAGGCATCACTCCGGAAGTACACAGTGTGATCTTCGGGTGGGTCCTTTTCCACCAGTTTGTCAAGACAGGTGAAGCCTCATTCTTGGACGAGGCCATTCTTGAGTTACAGGAGGTTGCATCATCTAAAGATGACGGTGGGAAGGAAGAACAATATTTGAAAAGCCTATCATGTTCAATATCATGCAATGGCAATGAAATGAAGTTGAGTTTGGTGGAGTCCGCCTTCTTCTTAATTAGCAGTTGGTGTGACATTAAACTACAAGCCTACCATTTGCACTTCCGTGAGAAAACTTCCTACTTTGGGAAAGTGGTGAGCCTGTTGTCCACTGTTGGAGTTGTTACTGATTGCAATACTGTAAAGTTAACAAAATTGGATGGTTTGAAAGCAATTGGAGCTAGAAAACTCAGAACCTATGTCGAGAGGTCCATAGAAGCTGCTTACAAAGAGGCGGAGAATAATGCAAATTCTGAATCCAAAGCGAGTATACATCCTCTGGCACTCCTTGCCAATAGGCTACGATTGGTTGTGGAGAAAGAAATTACTGTATTCTTCCCGGTGTTACGTCAATTATGTCCTGATTCTGGGATAATTGCAGCGATGCTATTGCACCAATATTATGGAGAAAAACTGAAGCCATTCTTAAAGGAAGTATCGAAGCTTTCAGATGATGTAAGGTCGGTGCTTCCAGCTGCCTATTCCTTAGATCGTGACCTAACTCATTTATTTACTGCTGCTTCCAAAGAAAGTAGATTAAGCCCTCTTCTCAAGGAAGACCTTGAGCACTATCCGATTGTACAAATTGCTAAGCCCATAATTCTTGACTGGATGATCGATCAACTGGAACAAACCTCTGAATGGACTGGACGTGCTTTCAAGTTAGAGGATTGGGAACCAATATCGTTTCAGCAAAATCTGGCAGCATCAGTTATTGAAGTTTTTAGAATTATTGAGGAGACTGTTGACCAGTATTTTGACCTGAACCTTCCGATGGACATCACACATTTGCAAGCTCTCCTGTCCATTGTCTATCACAGCTTGGATGGCTATCTATCGGGTCTTCTCAACCAGTTAGTTGAGAAGAATTATTTGTATCCACCTGTTCCTCCATTGACTCGTTTTATGGAGACAGTTGCAACAGGAAAGAAAAAGTTGCCCGAATGTCATTTAGATGAGCATGTGAGCAGCAAATTGAATGGATTGACAATATCTAAGCTTTGTATAAAATTGAATACCCTTGGTTACATTCAAAAACAAATTGAAACACTGGAGGATAGAATTGGAAAATCTTGGGCACTTATTGGAGAATCTGCTAAGCATAAACGCGCCCAGGAAGAGGCGATTGTCAATGGTGGTCTTCGTACCTGTAGTGACGAAGTTAATGAGTTGTTTGCCAACACTTTCAACAACATTAAGAGTTTCATTGCAAAGGCTATCAGCAAGTTTTGTGACATTACTGGCATAAGAGTTATTTTTTGGGATCTCAGAGATGGGTTCATCTCGTATTTGTATCGTGGCAATGTTGAGGCTGTTCGATTAGAAGACGTTCTTGCACATCTTGATACGGTCCTAAACAATGTATGTGGCAGGATCGACGATACTCTTAGGGATCTCGTGGTATTGAGCATCTGTCGAGCATCAATGGAAGCCTTCATATGGGTGATGCTTAATGGAGGTCCTTCACGTGCATTTTCTGATTCAGATATTGTTCTCATTAAGGAAGATCTCGGTATATTGAAGGACTTCTTTGTAGCTGATGGAGAAGGTCTTCCCCGTACTCTTGTTGAGAAGGAAGCAAAATTTGCTGAAGAAATATTGGGCTTATATTCACTTCCGACTGAAACTATTATTCAACTGCTGATGAGCTCAGGTGGGGATATTTCTACGGAATTGGATCCGTGTAGTAATAATGGCAATCTTCATTTTAACGATTCCCAGGCATTGGTACGAGTCTTATGCCACAAAAAAGATACGGAAGCTTCCACGTTTCTAAAGCGAAAATTTAATCTCCCTGCTTCTTCAGATTATGATATGACCCCCTTGCAAGCCTCAACTCAGAGATGA 3276 41.48 MEPGSLLQRYLRDRKNLLAFLLSSRFVRELRTPAGPVTDLSAIDLDSLSASYVLECIKSGGVIDISTATKKKRHESSYPIMIQSRLRTSYFLLSHPDLSGSPPSRAPPPPKMVERSSSDISCSSRSLGSSVDDNIATYSDDCGPQSNGTTATPSKLVKDLKVPALGLPKLYTGLTDDDLDEAAYLILLASIAFSGVEIYSSEDKKKENGIKHTVGMTSIRNELDVQSENFEGHLNFLHAIRTQMQISAISDACMRKRLMELDAKRNWGQINVPQVLLVLLHGVFRSDFPSEKAYMQWKFRQVNLLEEFCYSANLVASERQICESSLVKIRSTKEWDINMVRSERAKVLSGIGQVLSKLPAPSAYHLNIRLYEKLILGIFDVLDDSHPVMEVDDSLVLLKLTWSALGITPEVHSVIFGWVLFHQFVKTGEASFLDEAILELQEVASSKDDGGKEEQYLKSLSCSISCNGNEMKLSLVESAFFLISSWCDIKLQAYHLHFREKTSYFGKVVSLLSTVGVVTDCNTVKLTKLDGLKAIGARKLRTYVERSIEAAYKEAENNANSESKASIHPLALLANRLRLVVEKEITVFFPVLRQLCPDSGIIAAMLLHQYYGEKLKPFLKEVSKLSDDVRSVLPAAYSLDRDLTHLFTAASKESRLSPLLKEDLEHYPIVQIAKPIILDWMIDQLEQTSEWTGRAFKLEDWEPISFQQNLAASVIEVFRIIEETVDQYFDLNLPMDITHLQALLSIVYHSLDGYLSGLLNQLVEKNYLYPPVPPLTRFMETVATGKKKLPECHLDEHVSSKLNGLTISKLCIKLNTLGYIQKQIETLEDRIGKSWALIGESAKHKRAQEEAIVNGGLRTCSDEVNELFANTFNNIKSFIAKAISKFCDITGIRVIFWDLRDGFISYLYRGNVEAVRLEDVLAHLDTVLNNVCGRIDDTLRDLVVLSICRASMEAFIWVMLNGGPSRAFSDSDIVLIKEDLGILKDFFVADGEGLPRTLVEKEAKFAEEILGLYSLPTETIIQLLMSSGGDISTELDPCSNNGNLHFNDSQALVRVLCHKKDTEASTFLKRKFNLPASSDYDMTPLQASTQR 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3646150 3666643 - CmaCh06G007230.1 Cma06g00723 296277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00723 1091 PANTHER PROTEIN UNC-13 HOMOLOG 49 1084 IPR008528 -
Cma06g00723 1091 Gene3D - 669 888 - -
Cma06g00723 1091 MobiDBLite consensus disorder prediction 97 128 - -
Cma06g00723 1091 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 630 762 IPR014770 -
Cma06g00723 1091 PANTHER DNA TOPOISOMERASE 4 SUBUNIT B (DUF810) 49 1084 - -
Cma06g00723 1091 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 914 1024 IPR014772 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00723 - - - csv:101213131 1714.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01319 Cma-Chr4:6709825 Cma06g00723 Cma-Chr6:3646150 9.76E-12 dispersed
Cma06g00723 Cma-Chr6:3646150 Cma12g00250 Cma-Chr12:1254009 8.93E-80 dispersed
Cma06g00723 Cma-Chr6:3646150 Cma18g00848 Cma-Chr18:7398101 3.81E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g379 . . . . . Bpe07g00120 . . . . . . . . . . . Bhi11g00366 . . . . . . . . . . . . . . . Cone6ag0757 . . . . . . . . . . . . . . . . Cma06g00723 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009815 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00723 Cma_Chr06 FPKM 2.613269 3.181306 0.490285 0.390583 1.306395 1.501162 1.175148 1.063865 1.297828 1.45544