Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00724 ATGGCGTCTTCAAGGTCCCCGAATGGATCGTCCGATAATATCGTCGATAGCACTCCATTGATGGGGAATCCAAACCGGTCGTTGGAAGATGGGCATTCTGGTCGGCGATTTGTGCAGAGGCAAAGTCTGCATCAGGCGGCTAGGTTTCTGCGGCAGGCGACTAGTCGGAGGGCGTTGCGCGAGCCGTCTATGTTGGTTCGAGAGACGGCTGCGGAGCAATTGGAGGAGCGGCAGAACGATTGGGCGTATTCTAAGCCGGTTGTTATCCTTGACATCTTGTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCATTTTGATTCTGAGCCGCAGGGAGTCTCCTACAAAGCCTTTGAGGCTATGGATTCTGGGGTATGCGCTCCAATGCATTCTCCATATGGTGAGTGTTTGTATTGAGTATTATCGGCGCATACAGCGACGATTCTTGGCGTTTAACTCGACGGATGAAGGAAATTCTGCGCGCGGGATTTCGGGTTTGGGGCCGAGAGGAAATTCGAGCCATTATGCATCCCTGGCACAGTTGGATGATAACGATACCAGTATAGCAAAGCACCTTGAATCTGCAAATACAATTTTTTCATTCATCTGGTGGATTATTGGATTCTACTGGGTATCTGCAGGAGGCCGATCTTTAGCGCACGCCTCCCCTTTGCTTTACTGGTTATGTATCATATTCTTGGGCTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGGATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTGTATGCTGTAGCAGACCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGGTCGACGATGCCGAGAAATTCTCTGCTGATTTACACCAACCTCTCGGTGGTATAATGACCGAGTGTGGTACAGATTCACCCATTGAACACGCCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATACGACGATGGCGTCGAGCTACGAGAGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCTGTATATTAACGCTACATGTCCTCTCTGCAAGTATCACATCTTGAAAAATAGTTATCTTGCTGAAGAGGAAGTTTAA 1152 48.0 MASSRSPNGSSDNIVDSTPLMGNPNRSLEDGHSGRRFVQRQSLHQAARFLRQATSRRALREPSMLVRETAAEQLEERQNDWAYSKPVVILDILWNFAFVVVAATILILSRRESPTKPLRLWILGYALQCILHMVSVCIEYYRRIQRRFLAFNSTDEGNSARGISGLGPRGNSSHYASLAQLDDNDTSIAKHLESANTIFSFIWWIIGFYWVSAGGRSLAHASPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSADLHQPLGGIMTECGTDSPIEHALSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWLYINATCPLCKYHILKNSYLAEEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3667292 3670720 - CmaCh06G007240.1 Cma06g00724 296278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00724 383 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00724 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 381 IPR013083 -
Cma06g00724 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Cma06g00724 383 SMART ring_2 328 368 IPR001841 -
Cma06g00724 383 CDD RING-H2_RNF111_like 327 369 - -
Cma06g00724 383 MobiDBLite consensus disorder prediction 1 32 - -
Cma06g00724 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Cma06g00724 383 Pfam Ring finger domain 327 369 IPR001841 -
Cma06g00724 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Cma06g00724 383 SUPERFAMILY RING/U-box 319 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00724 Cma-Chr6:3667292 Cma14g02015 Cma-Chr14:14098883 1.16E-154 dispersed
Cma16g01019 Cma-Chr16:7845400 Cma06g00724 Cma-Chr6:3667292 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00724 - - csv:101209228 661.759