Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00729 ATGGCTTCCTACTTCCCTCGTCCGAGCTTTGTCGCCATTGTCGTCGTTTTCGTTTTGCCGCTTATGATGCCTGGGATCACAATTAGACCGGTGCTCGCCATCTTTCGACCGAGCCCTTGGAAGATTGCTCATGCTACCTTTTATGGTGACGAGACAGCATCGGAAACAATGGGAGGAGCTTGTGGATATGGAAACCTCTTCACGAATGGCTATGGCATCGACACAGTGGCTTTAAGCTCAACACTCTTCAATAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCATGCAATCCAAAGCTTGTTACGCTAATGTTGCTTTCACAACGGTGACGGCCACCAATCTCTGCCCTCCCAATTGGTCTAAACCCTCCGACAACGGTGGCTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCGAAACCCGCCTTTATGAAGATTGCCAACTGGAAGGCCGGGATCATTCCCGTTGCGTACCGTCGTGTTCCATGCATAAAAAAAGATGGCATTCGATTCACACTCCAAGGAAATGGGTACTGGCTTTTGGCGTATGTGATGAATGTCGGGGGCGGAGGGGACGTGTCCGGGATGTGGGTGAAAGGAAGCAAGACAGGGTGGATTAGAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCCACGTTGGTTGGACAATCACTGTCTTTTATAGTCACCTCGTACACCACCAAAGAGACCATCACGGCTTGGAATGTTGCTCCTTCTAATTGGAAGTTTGGCGCGACCTACAAAGCTAACGTCAACTTCCGTTGA 801 49.31 MASYFPRPSFVAIVVVFVLPLMMPGITIRPVLAIFRPSPWKIAHATFYGDETASETMGGACGYGNLFTNGYGIDTVALSSTLFNNGYACGTCFQIKCMQSKACYANVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCIKKDGIRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIRMSHNWGASYQAFSTLVGQSLSFIVTSYTTKETITAWNVAPSNWKFGATYKANVNFR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3697164 3698385 + CmaCh06G007290.1 Cma06g00729 296283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00729 266 PANTHER EXPANSIN-A7 15 266 - -
Cma06g00729 266 PANTHER EXPANSIN-A15 15 266 IPR002963 GO:0009664
Cma06g00729 266 SUPERFAMILY PHL pollen allergen 169 260 IPR036749 -
Cma06g00729 266 SMART dpbb_1 75 161 IPR007112 -
Cma06g00729 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Cma06g00729 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Cma06g00729 266 Gene3D - 171 266 IPR036749 -
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Cma06g00729 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Cma06g00729 266 Pfam Expansin C-terminal domain 172 250 IPR007117 -
Cma06g00729 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Cma06g00729 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Cma06g00729 266 Gene3D - 30 166 IPR036908 -
Cma06g00729 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Cma06g00729 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00729 Cma15g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00729 Cma-Chr6:3697164 Cma04g00211 Cma-Chr4:1005461 1.48E-95 dispersed
Cma15g01184 Cma-Chr15:7491843 Cma06g00729 Cma-Chr6:3697164 1.95E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00729 - - csv:101207770 496.893