Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00735 ATGGCGTTTCTAAGGTCCGCAGCAACAACCACTAGCCTTGCCATAACAGCGTCTGCTTTATCTGCAGCTTTCATCTTCCCCGGTCCTTCTTCTTCTTCTTCTTCTCCTCATTTTCATCTCCCTCAATCCTTTAAACCCATTCCCCTCTCTTTACATTCGTCTCGAAATTCCTCTGGATTTTCCAGAATCTCTGCCTATTCCCCCTCTGCTGTTCCCATGGAGAAACCCACCTCGGAACCAATCTCCTCCTATCAGAGCACCGTTGATTTGCCCGAACTTTTGACAGAGTTTATGGTGGATATGAAATGTGAGGGCTGCGTTAATGCCGTCAAGAACAAGTTACAGGGCGTTGATGGTGTGAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATACTGGGTACAACACCTGTGAAGACAATGACTGAAGCTTTGGAGCAGACGGGTCGAAAAACTCGGTTAATTGGGCAAGGGGTTCCCGAGGATTTCTTAGTTTCTGCTGCTGTTTCCGAATTTAAAGGCCCGAATATATTTGGCGTGGTTCGATTGGCTCAAGTAAGTATGGAACTAGCCAGGGTTGAAGCCAACTTTAGTGGATTGTCACCTGGAAAACATGGTTGGTCAATCAATGAATTTGGTGACCTGACTAGAGGTGCTGCTAGCACAGGGAAAGTGTTTGATTCTGCAGATTCTGGCCCTAGTAATGAGCCATTGGGCGACCTGGGAACATTAGAGGCCGATGAAAATGGCGAAGCGTTTTTCTCTGGTGTGAAACAGAAGCTGCGTGTGTGTGATCTCATCGGACGATCAATAGCGGTGTATGAGACCGAAGATAAATCAGTTCCGGGGATGGCAGCAGCAGTAGTAGCTCGAAGCGCAGGTGTCGGAGAGAACTACAAGAAGCTATGCACCTGTGATGGGACTACCATATGGGAATCAAGTGACAGGGATTTTGTCACCAGCAAAGTCTAA 978 47.34 MAFLRSAATTTSLAITASALSAAFIFPGPSSSSSSPHFHLPQSFKPIPLSLHSSRNSSGFSRISAYSPSAVPMEKPTSEPISSYQSTVDLPELLTEFMVDMKCEGCVNAVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKTRLIGQGVPEDFLVSAAVSEFKGPNIFGVVRLAQVSMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFDSADSGPSNEPLGDLGTLEADENGEAFFSGVKQKLRVCDLIGRSIAVYETEDKSVPGMAAAVVARSAGVGENYKKLCTCDGTTIWESSDRDFVTSKV 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3716765 3720888 + CmaCh06G007350.1 Cma06g00735 296289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00735 325 ProSiteProfiles Heavy-metal-associated domain profile. 101 156 IPR006121 GO:0046872
Cma06g00735 325 CDD HMA 96 155 IPR006121 GO:0046872
Cma06g00735 325 Pfam Heavy-metal-associated domain 97 153 IPR006121 GO:0046872
Cma06g00735 325 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 15 325 IPR024134 -
Cma06g00735 325 Gene3D - 94 156 - -
Cma06g00735 325 Pfam Copper/zinc superoxide dismutase (SODC) 181 282 IPR001424 GO:0006801|GO:0046872
Cma06g00735 325 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 15 325 - -
Cma06g00735 325 Gene3D Superoxide dismutase, copper/zinc binding domain 162 293 IPR036423 GO:0006801|GO:0046872
Cma06g00735 325 SUPERFAMILY Cu,Zn superoxide dismutase-like 158 317 IPR036423 GO:0006801|GO:0046872
Cma06g00735 325 SUPERFAMILY HMA, heavy metal-associated domain 94 156 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00735 K04569 CCS; copper chaperone for superoxide dismutase - csv:101206552 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00735 Cma-Chr6:3716765 Cma14g01603 Cma-Chr14:12056932 6.49E-07 dispersed
Cma06g00735 Cma-Chr6:3716765 Cma11g01380 Cma-Chr11:9111745 6.02E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00735 Cma_Chr06 FPKM 13.012869 14.583649 24.394054 29.39595 43.588478 36.781216 41.199104 25.177923 25.666117 25.669201