Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00738 ATGAGAAGGGTTCCACGGCTTTGTTTTTCTTCTCATGCTCTTCTGTTCTTGATTACATTTCTCATCGGATTTTGTTCCGCCATCACTGAGAAGGACATTTTACTTCAATTCAAAGGTGCTGTTACAGAGGATCCGTTTGATTTCTTGAAAACTTGGGTCGCCGGCGAGGATCATTGCCTGAACTTCAGCGGCGTGTTGTGTAATTCCGATGGTTTTGTGGAGAAGATTGTGCTATGGAACACCAGCTTGGCTGGAACTTTATCGCCTGCCTTGTCCGGATTGAAGTTCTTGAGGACTTTGGCATTGTATGGAAATAGATTTACTGGCAATATTCCAATTGAATATGGCAACATTGTTACTCTTTGGAAGCTGAACTTGAGCTCGAATGCTTTGTCAGGTTCGGTCCCGGAGTTCATTGGCGATTTGCCAAACATTCGGTTTCTAGATTTGTCTAGAAATGGCTTTACAGGGAAGATTCCTTCAGCTGTGTTCAAGAGTTGTCTCAAAACTAGATTTGTGTCGTTTTCTCATAACAGATTTTCAGGTATGATTCCTTCAACAATTATGAACTGTTTGAACCTTGAAGGCTTTGATTTCTCAAACAATGATCTAAGTGGGAGTATTCCTTTGCAACTTTGTAACATTCAAAGATTAGAATATGTTTCTGTGAGAAGCAATTCACTTACTGGGAGTGTTCAAAGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTTAGTAGCAATTCGTTCACTGGGTCGCCACCGATCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTTGTGGGTTGTAGTGATAATCTGGAAGTTCTTGATGTTTCATGGAATGAATTAGATGGGGAGATCCCATTGAGCATTACAAAGTGTAGGAGCCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAGGATCCCTGCTGAACTTGCAGATTTGAACAAGCTTTTGGTGGTTCGGTTGGGTTATAACTCGATCACCGGGACAGTTCCAGCCATTTTCGGGAACATCGAGCTGCTTCAGGTTTTGAATTTGCACGGTCTCAAACTTGTTGGTGAGATACCTGCTGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGTAATGAATTGGAAGGGGGAATTCCTCAATCTGTTTATAACATGACATACCTTGAAATTCTTGATCTTCATGATAACCATCTGAACGGACTCATTCCGTCGACGCTTGGGAGCCTCTCAAAACTACAGTTTCTGGATCTATCTCGAAATCTACTGTCTGGTTCGATACCTCCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCGTCCAATAACCTTTCAGGCATTATACCTCCCGCCAAGACGATCCAAGGTTTCGGGCCATCTGCATTCTTAAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCTAATAACGCCACTGGCACGACTTCCATATCGAAGAAGCCTAAAGTTCTTAGTCTATCTGCAATCATTGCAATTGTAGCAGCAGTTGTGATCCTGGCCGGGGTTTGCGTGATCTCGATTTTGAACCTAATGGCTCGGACAAGGAAGGCGAGGAGCACGGAAATCATTGAGAGCACACCACTCGGTTCAACCGATTCAGGTATCATAATTGGGAAGCTGGTTCTTTTCAGCAAATCCTTGCCATCGAAGTATGAAGACTGGGAGGCTGGCACCAAAGCGCTGCTCGACAAGGAATGTCTTATAGGGGGTGGCTCTATCGGCACTGTCTACAAGACAAGTTTTGATGTCGGAATCTCCATTGCTGTAAAGAAGCTGGAGACTCTTGGGAGGATCAGAACCCAAGACGAGTTCGAGACAGAAATTGGACGTTTGGGAAACATTAAACACCCTAACTTAGTCGCTTTTCAGGGATACTATTGGTCTTCGTCAATGCAGTTGATTCTATCAGAATTCGTCGTAAATGGCAATCTTTACGACAATTTACACGGTATGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGTTACATTGGTCTAGGAGATATCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAAGCCTCCAATTCTTCACCTCAACATAAAATCAACTAACATTCTGTTAGACGAAAACTACGAAGCCAAGTTATCGGATTACGGGCTGGAGAAGTTGCTTCCTGTTATGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTCGCACCGGAGTTGGCACAAAGTTTGAGAGTTAGCGAAAAATGCGATGTCTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCGGCTTCTGACTGTTTCGATCGGAACTTACGCGGGATTGCTGAAAGCGAGCTCATTGAAGTGATGAAGTTGGGATTGATCTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGGTAAGAAACGGATTAGGATCATAG 2652 43.48 MRRVPRLCFSSHALLFLITFLIGFCSAITEKDILLQFKGAVTEDPFDFLKTWVAGEDHCLNFSGVLCNSDGFVEKIVLWNTSLAGTLSPALSGLKFLRTLALYGNRFTGNIPIEYGNIVTLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNGFTGKIPSAVFKSCLKTRFVSFSHNRFSGMIPSTIMNCLNLEGFDFSNNDLSGSIPLQLCNIQRLEYVSVRSNSLTGSVQRQFSACQSLKLVDLSSNSFTGSPPIEVLGFKNITYFNVSYNRFSGGIAEVVGCSDNLEVLDVSWNELDGEIPLSITKCRSLKILDLESNKLVGRIPAELADLNKLLVVRLGYNSITGTVPAIFGNIELLQVLNLHGLKLVGEIPADITSCRFLLELDISGNELEGGIPQSVYNMTYLEILDLHDNHLNGLIPSTLGSLSKLQFLDLSRNLLSGSIPPTLENLTLLHHFNVSSNNLSGIIPPAKTIQGFGPSAFLNNPFLCGAPLDPCSANNATGTTSISKKPKVLSLSAIIAIVAAVVILAGVCVISILNLMARTRKARSTEIIESTPLGSTDSGIIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFDVGISIAVKKLETLGRIRTQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVVNGNLYDNLHGMSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCKPPILHLNIKSTNILLDENYEAKLSDYGLEKLLPVMDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAESELIEVMKLGLICTSEIPSKRPSMAEVVQVLESVRNGLGS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3728629 3731607 + CmaCh06G007380.1 Cma06g00738 296292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00738 883 SUPERFAMILY L domain-like 262 499 - -
Cma06g00738 883 SMART LRR_typ_2 335 358 IPR003591 -
Cma06g00738 883 SMART LRR_typ_2 431 455 IPR003591 -
Cma06g00738 883 SMART LRR_typ_2 142 166 IPR003591 -
Cma06g00738 883 SMART LRR_typ_2 407 430 IPR003591 -
Cma06g00738 883 PANTHER UNNAMED PRODUCT 6 880 - -
Cma06g00738 883 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Cma06g00738 883 Gene3D Phosphorylase Kinase; domain 1 573 672 - -
Cma06g00738 883 ProSiteProfiles Protein kinase domain profile. 596 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00738 883 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Cma06g00738 883 CDD STKc_IRAK 602 875 - -
Cma06g00738 883 Pfam Protein kinase domain 600 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00738 883 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cma06g00738 883 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Cma06g00738 883 Pfam Leucine rich repeat 388 444 IPR001611 GO:0005515
Cma06g00738 883 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Cma06g00738 883 SUPERFAMILY RNI-like 70 349 - -
Cma06g00738 883 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Cma06g00738 883 Gene3D Transferase(Phosphotransferase) domain 1 674 881 - -
Cma06g00738 883 Gene3D Ribonuclease Inhibitor 27 168 IPR032675 -
Cma06g00738 883 Gene3D Ribonuclease Inhibitor 238 508 IPR032675 -
Cma06g00738 883 PANTHER - 6 880 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00738 Cma-Chr6:3728629 Cma14g01481 Cma-Chr14:11254750 2.72E-160 dispersed
Cma06g00738 Cma-Chr6:3728629 Cma15g00170 Cma-Chr15:777070 7.41E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68638 PF00069 Pkinase 5.10E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00738 - - csv:101212415 1548.1