Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00745 ATGTCACTCACATCCACCTTGTTACATTCCTTTTCAAATCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCGTTGCCGAGGTCGGCGACAGATTTCGCCGCTTCTTCTCAAGCTCTGACTGGAATTCGATTTCCGAGGATTATCGGCGCCGGTCTGGCTTTGGACTCGAAAACCATGGTGGTTTTGATCGGCACGGGCTTGACTCTTGCTCTTCTGGGACCTGAATCGGCTGCTGCTACTGCTGCTACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAACCCCAAAATGCTCTGTCCTTGCCCACCTGGGCTATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAGGGACTTTCTTGGGGAATGGTACCATTGCTTGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAATTCTGAGTCTCTCGAGGTTTTGGTGGCCCTTCAGGCAATACTGACGGCTGTAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATATACAAAGCATCACAAGAACGTTCAAGTAAGTTGTAA 609 47.62 MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3762265 3766757 + CmaCh06G007450.1 Cma06g00745 296299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00745 202 PANTHER NUCLEOLAR-LIKE PROTEIN-RELATED 35 201 - -
Cma06g00745 202 Pfam Protein of unknown function (DUF2499) 102 189 IPR019634 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00745 - - - cmos:111448709 340.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00745 Cma16g01031 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01031 Cma-Chr16:7921314 Cma06g00745 Cma-Chr6:3762265 1.74E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g456 . . . . Bpe05g00609 . . . Cmo06g00767 Cmo16g01077 . . . . . Cpe14g00851 . . . . . . . . Cla10g00311 Cam10g0324 Cec10g0337 Cco10g0331 Clacu10g0322 Cmu10g1161 Cre10g0571 Cone8ag0350 Cone12ag0345 . . . . . Cme06g02644 . . . . . . Bma05g00789 . . . . Cma06g00745 Cma16g01031 Car06g00665 Car16g00982 Cpe08g00776 . . . . . . . . . . . . . . . . Csa03g00332 Chy06g01992 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010004 1 0 1 1 1 0 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00745 Cma_Chr06 FPKM 5.989931 6.798946 7.686287 6.908177 13.098533 13.034052 15.359279 9.34071 8.568979 10.097973