Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00747 ATGGGGTTTTGTTTTGATTACAGAAAATTCTGTATGGAGGTACGAGAAGGGGATGCCGGAAATGGGGTTACGGCGTCGGCTGAGTCAGATCCTTTAAGACCCGACACGACGGCTCCGGTACCGGAAGGTGGTGGTCCTGTAGGTTCTGCGGCTGTGGCGGCGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGATGGAAAGTTGAATGTGGCGGCGCTGTCACGGAAGACAATATCAGGGTCGGCGGCACTAGCACTGGTAGTGGCACCGGCGGCGGTGATTGATTTCTCGGCTGCAAAACGGGGGAAAGTGCGGCCGGCGAGTTGGTTGAGCAAAACCAAATATGAAGCAGAGAGTTTAGCCGAATGGGTACCTTTCTCTGTTGGTGGTAATTTTACACCTCATATCATCACTGTCAACTCTGGTGAGGACTTAATGATGAAGATTCTCTCATTTTCTCAACAAGGGTCTCGAGCCATATGCATTCTCTCTGCTAATGGTGTGATTTCGAGCGTCACACTTCGTCAACCGAATTCTTCCGGAGGAACATTAACATATGAGGGTCGGTTCGAGATATTGTCGTTGTCAGGATCGTTCATGCCGAGTGACAATGCAGGAGCTAGGAGTCGAAATGGTGGAATGAGTGTTTCCTTAGCGAGCTCAGACGGACGTGTCTTTGGTGGTGGAGTTGTTGGTTTGTTAGTAGCTGCAAGTTCTATTCAAGTGGTAGTAGGAAGCTTTATATCTGGGAACCAACATGAACAAAAATCAAAGAAACCGAAACAAGACATGGTATTGCCAGTTTCAGCTCTTCCAATTTCCCCTGTTGAACTGAAGTCATACATAGCAACAACATCATCATTCCGTGCTGAAACTTGGTCACCTTTAGGGCTAGATTTGAGAAGTCAGCCAACGGATATGAACCGAAGTATAAATAGAAATAGGAGGAAGGGTTTGAGGAGGGGAGTGAATGGCAAAATGGGAATGAGAATTATGGTGGGATTGGTGGCTGTCATGGCGGCGGCGGCGGCGGCGGCGGTGGTTTTGTTGGCAACTTCAAAATCATCTCAAGTTTTTCTAAGTAGTAAGCTTCTTGGGAGTCCTCATTTCATGTTCTCAATCTTCAACTCTATAATTCTTCTCATAATTGTGACATACCATCGGCCACCACTTCATCAATCTCCCTATCATATACGAAAAGGGTCGTGCTACCTAGAGTCGTATCAAGGGTACTATACCCCTTGTCAAAACATTGAATTCTATGCTTGTGACGATGAACATGACAGTGACGATGAATATGAAGATGACAGTCAAAATGAGAAAGACGAAATCGAGCAATTAAATGAAGATGAAACCGAGCAATGTGATGAAGAAGATGAAGACGTTGATGATGAGGATGATACTGAGCGATGTGATGAAAAAGACAACGACGATGAACTGGAGAAGAGGATAGAAGAATTCATAGCTAAAGTGAACAAGCGATGGAGAGAAGAGAAGTTACGAGACAATTTGTTTAATCAATTTTGTTCGAGTAATGGTTTTGCGATGTTCTACTATGTATTCGTTTCTCCTAACTTAATTTTACGGGCTTTCAGTTTTCGTTGCTTGCTGCTTCCCTTTGAGCGTGGACGTTTTGACATCATGGTTAATGCCATTAAAGGACTATTCATCTCCTGTGACATACCTATGGGACAATTTATCATCAATTACAATGCTTCCCTACCTGCATCCCATAGATTTATCATCCATATTTTGGACAATACTCACATGTTTGTGCAACCCAATGTAGCTGATATGATTCGAAATGCCATGTCTGAATTTCGAGATCAGAATTCGTATGAGAAACCTACTTGA 1860 44.41 MGFCFDYRKFCMEVREGDAGNGVTASAESDPLRPDTTAPVPEGGGPVGSAAVAAKKKRGRPRKYGPDGKLNVAALSRKTISGSAALALVVAPAAVIDFSAAKRGKVRPASWLSKTKYEAESLAEWVPFSVGGNFTPHIITVNSGEDLMMKILSFSQQGSRAICILSANGVISSVTLRQPNSSGGTLTYEGRFEILSLSGSFMPSDNAGARSRNGGMSVSLASSDGRVFGGGVVGLLVAASSIQVVVGSFISGNQHEQKSKKPKQDMVLPVSALPISPVELKSYIATTSSFRAETWSPLGLDLRSQPTDMNRSINRNRRKGLRRGVNGKMGMRIMVGLVAVMAAAAAAAVVLLATSKSSQVFLSSKLLGSPHFMFSIFNSIILLIIVTYHRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSDDEYEDDSQNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEKDNDDELEKRIEEFIAKVNKRWREEKLRDNLFNQFCSSNGFAMFYYVFVSPNLILRAFSFRCLLLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3781325 3787785 + CmaCh06G007470.1 Cma06g00747 296301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00747 619 Pfam Transcription factor TFIIH complex subunit Tfb5 550 617 IPR009400 GO:0000439|GO:0006289|GO:0006367
Cma06g00747 619 SMART Tbf5_2 550 617 IPR009400 GO:0000439|GO:0006289|GO:0006367
Cma06g00747 619 Gene3D - 136 266 - -
Cma06g00747 619 ProSiteProfiles PPC domain profile profile. 131 271 IPR005175 -
Cma06g00747 619 Coils Coil 432 463 - -
Cma06g00747 619 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 255 - -
Cma06g00747 619 Gene3D - 550 617 IPR035935 -
Cma06g00747 619 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 272 IPR039605 GO:0003680
Cma06g00747 619 MobiDBLite consensus disorder prediction 20 64 - -
Cma06g00747 619 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 39 272 - -
Cma06g00747 619 SUPERFAMILY TFB5-like 555 618 IPR035935 -
Cma06g00747 619 MobiDBLite consensus disorder prediction 429 476 - -
Cma06g00747 619 MobiDBLite consensus disorder prediction 429 478 - -
Cma06g00747 619 CDD DUF296 135 226 IPR005175 -
Cma06g00747 619 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00747 Cma-Chr6:3781325 Cma06g01133 Cma-Chr6:7636265 5.95E-64 dispersed
Cma15g01173 Cma-Chr15:7425014 Cma06g00747 Cma-Chr6:3781325 4.05E-111 wgd
Cma16g01035 Cma-Chr16:7958211 Cma06g00747 Cma-Chr6:3781325 3.30E-144 wgd
Cma02g01510 Cma-Chr2:8610196 Cma06g00747 Cma-Chr6:3781325 4.85E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00747 - - cmos:111448214 492.656