Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00763 ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTCCTTCCTCCGACCACCTCTGCTATGTCCATTGCAACATTTGCGACACGGTTTTGGCGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGGTCACTGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTGAACATGCGTGGTGGCATGCTACTCCCTTCTCCCAATCACTTTCATGCCTTTCCTCCCTCCTCCACTCCTTTCTTCACTCCCAATGCTCATAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGCGATGAACCAAACCGATGGAATTGATTTGACAATGGTAACTCGTGTAGGCAATGATGTTCCAAGGGCGCCCTCAAACATAAATAGACCTGCAGAAAAGAAACAGAGAGTACCCTCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATTGGGCCCACTTCCCTCACATTCACAATTTTGGTGTTCCTCCTCCCAACAACAACAACAACAACAACAACAACACACCCTAG 606 48.35 MSSFSLPTTFSQHPPPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHAFPPSSTPFFTPNAHNFLEEISNPNPNFAMNQTDGIDLTMVTRVGNDVPRAPSNINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPPNNNNNNNNNTP 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3875334 3877797 + CmaCh06G007630.1 Cma06g00763 296317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00763 201 Pfam YABBY protein 19 183 IPR006780 GO:0007275
Cma06g00763 201 CDD HMGB-UBF_HMG-box 140 176 - -
Cma06g00763 201 Gene3D High mobility group box domain 127 181 IPR036910 -
Cma06g00763 201 PANTHER PROTEIN YABBY 6-RELATED 10 193 IPR006780 GO:0007275
Cma06g00763 201 SUPERFAMILY HMG-box 129 179 IPR036910 -
Cma06g00763 201 PANTHER AXIAL REGULATOR YABBY 3 10 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00763 Cma15g01149 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00763 Cma-Chr6:3875334 Cma11g00536 Cma-Chr11:2583470 6.32E-49 dispersed
Cma15g01149 Cma-Chr15:7308199 Cma06g00763 Cma-Chr6:3875334 2.31E-73 wgd
Cma02g01557 Cma-Chr2:8833805 Cma06g00763 Cma-Chr6:3875334 2.25E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35204 PF04690 YABBY 6.20E-67 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00763 K25796 - cmax:111498508 363.614