Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00769 ATGCGGGTCAAGGAGATGCACCCTCTCTGCTGTATCTCTCTGGAGAATTTCAGCGGCGGAATCGGTGACCAGTCGCCGGAGGAAGCCTCGTCATTGTCCCGGAGTAGAAGCTTGCCGGTGAGCTTTCCGGCATTTTCGAATACTAGCACTCAGCAGATTTCTAGATCTGTTGATAGAGTGGCTGGAGTTCTTTACAAATGGACTAATTACGGTAAGGGATGGAGATCGAGATGGTTCGTGTTGCGAGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTATCACAGCCTAATGACGATGTTCAATTGATCGGAAAGATTTCGACGAATCGGCTTTCGAGAAGGAAGCGACAGAAAAGTGGGGGAATCGTTCATTTGAAGGTCTCATCGTTCCGAGAAAGCAAATCAGATGACCGACGGTTTTATATATTCACTGCAACAAAGACACTTCATCTGAGAACTGAATCAAAGAAAGACAGGGTGATTTGGATTCAAGCTTTAGCTTCTTCCAGAAGCTTATTTCCGTTGAGAATTTTGAATGATAATCTTCCCTTTGTACCAAATGATTTATCCGTTTCCACTCAGAAACTCGAGAAGCGTTTACTTGAAGAGGGAATCAGTGATGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCCGAGTTCTCAGAAATGCAGGGACAGCTGAAAGTACTTTTGGAACAAAGATCTTGTTTAATTGATACCTTGAGGGAATTTGAGGCAGCTAATATAGAAATTGAAGCTAATGGAATTCACAATGGTGAGTACCAGTTGATGAAACATGATTTTTCCACCGAATGCAGTGGAAAATACAGTGAATGTGCTACTACCGAGTCTTCGGATGATGTTGAGAAACAAGATCTTGACGATGGATCTGATGTGGATGAAAGTTTCTTTTATGACACAAACGAATCTTTTACAGAATTCACTCTTGGCTATGGATCAGTAAAAGGGGCTTTTGATTCCTCCGATACACTTAAGGTTCGTGATAGTCGACAGGACAATGCAGAGAAGATGCACGACGAACAGATTGAAAATTTTGTGCATTCTAATGTTCAGAGAAGAAAAAAGCTTCCAGATCCCGTGGAGAAAGAGAAACGAGTCAGTCTTTGGTCTATGATAAAAGACAATGTTGGAAAGGATCTTGCACGAGTTTGTCTCCCAGTTTATTTCAATGAGCCCATATCATCCCTTCAGAAATGTTGTGAGGATATGGAATATTCTCATCTTTTAGACCAAGCATATGAACATGGAATACAGGGGAACAATCTCCTCCGAGTCCTCAAGGTTGCTTCATTTGCTGTTTCTGGTTATGCTTCCTCTGAAGGACGACATTGTAAGCCATTCAACCCTTTGCTAGGGGAAACTTATGAAGCTGACTTCCCTGAGAAAGGGATTCGCTTCTTCTCGGAGAAGGTCAGTCACCACCCAACCGTCATTGCGTGCCACTGTGTAGGTAGAGGATGGAAATTCTGGGGGGAGAGTAATCTCCGATCAAAATTTTGGGGTCGTTCGATTCAGCTTGACCCTGTTGGAGTTTTGAACCTGGAATTTGATGATGGAGAAAGATTTCAGTGGAGCAAGGTGACAACAAATATTTATAATCTCATTCTTGGAAAAGTATATTGTGACCACCATGGTACGATGCACATACGTGGTAATAGAGAATATTCTTGCACACTTAAGTTCAAAGAGCCTTCAATTCTAGATCGAAATCCTCATCAGGTTCATGGATTTATTGAAGATGGTAATGGTCGAAAGGTTGCCACACTATTTGGCAAATGGGATGAAGGTATGTATTACGTCGAAGGTGAAAGCAATGGAAACCCGAATCGCAGTAGTTCAAGTGATGTCTCAATGCTGTGGAAAAGCGAAAAACCTCCTCCTAATCTCACTCGTTACAATTTAACTTCGTTTGCCATCACTCTTAACGAACTAACAGCGGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCAGACCAGCGACATTTAGAAAACGGCGAATACGAAAAGGCAAATGCAGAGAAACAACGCTTGGAGAGACGGCAACGAATTTCAAGGAAGTTGCAAGACAATGGTTGGAAACCCAGATGGTTCCATAGAGAGGGTGAAGACACAGACGAGGCATACAAATACATGGGTGGCTACTGGGAAGCACGAAAAGAAAGAAAGTGGGATGGTTGTCTAGATGTTTTTGGCGAATTGAACGAGAACTTGGTCGGTGATTCGGGATCATGA 2271 42.93 MRVKEMHPLCCISLENFSGGIGDQSPEEASSLSRSRSLPVSFPAFSNTSTQQISRSVDRVAGVLYKWTNYGKGWRSRWFVLRDGVLSYSKISLLSQPNDDVQLIGKISTNRLSRRKRQKSGGIVHLKVSSFRESKSDDRRFYIFTATKTLHLRTESKKDRVIWIQALASSRSLFPLRILNDNLPFVPNDLSVSTQKLEKRLLEEGISDAVVKDCEQIILSEFSEMQGQLKVLLEQRSCLIDTLREFEAANIEIEANGIHNGEYQLMKHDFSTECSGKYSECATTESSDDVEKQDLDDGSDVDESFFYDTNESFTEFTLGYGSVKGAFDSSDTLKVRDSRQDNAEKMHDEQIENFVHSNVQRRKKLPDPVEKEKRVSLWSMIKDNVGKDLARVCLPVYFNEPISSLQKCCEDMEYSHLLDQAYEHGIQGNNLLRVLKVASFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTVIACHCVGRGWKFWGESNLRSKFWGRSIQLDPVGVLNLEFDDGERFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIEDGNGRKVATLFGKWDEGMYYVEGESNGNPNRSSSSDVSMLWKSEKPPPNLTRYNLTSFAITLNELTADLKERLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRISRKLQDNGWKPRWFHREGEDTDEAYKYMGGYWEARKERKWDGCLDVFGELNENLVGDSGS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3933269 3939827 + CmaCh06G007690.1 Cma06g00769 296323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00769 756 SUPERFAMILY PH domain-like 60 168 - -
Cma06g00769 756 MobiDBLite consensus disorder prediction 613 628 - -
Cma06g00769 756 SUPERFAMILY Oxysterol-binding protein-like 371 748 IPR037239 -
Cma06g00769 756 Gene3D - 55 173 IPR011993 -
Cma06g00769 756 Gene3D - 462 635 - -
Cma06g00769 756 Pfam Oxysterol-binding protein 376 732 IPR000648 GO:0008289
Cma06g00769 756 SMART PH_update 58 174 IPR001849 -
Cma06g00769 756 MobiDBLite consensus disorder prediction 611 631 - -
Cma06g00769 756 Gene3D - 672 736 - -
Cma06g00769 756 MobiDBLite consensus disorder prediction 659 691 - -
Cma06g00769 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 357 IPR000648 GO:0008289
Cma06g00769 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 354 748 IPR000648 GO:0008289
Cma06g00769 756 Coils Coil 673 700 - -
Cma06g00769 756 ProSiteProfiles PH domain profile. 57 172 IPR001849 -
Cma06g00769 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 354 748 - -
Cma06g00769 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 357 - -
Cma06g00769 756 Pfam Pleckstrin homology domain 62 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00769 K20456 OSBP; oxysterol-binding protein 1 - csv:101213703 1332.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00769 Cma15g01141 CCT
Cma06g00769 Cma16g01066 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00769 Cma-Chr6:3933269 Cma15g00703 Cma-Chr15:3369942 0 dispersed
Cma15g01141 Cma-Chr15:7251929 Cma06g00769 Cma-Chr6:3933269 0 wgd
Cma16g01066 Cma-Chr16:8157992 Cma06g00769 Cma-Chr6:3933269 0 wgd
Cma02g01548 Cma-Chr2:8783352 Cma06g00769 Cma-Chr6:3933269 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00769 Cma_Chr06 FPKM 12.722775 13.302504 7.075221 7.671336 22.753899 22.113007 23.218319 4.34105 3.821408 3.775514