Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00779 ATGAGGGGTATTCCCTTTCAGTTTCAGGGGAAGGGGGAGTTGGAAATTTCAGCCGCTTTTTCTTCTCCGATTTGCTCTGGTAAGTGGGTTAAGAAAGGAGAACAACAACAACAACAACAACAACAACAAGAAGCAGAAGAAGAAGCAGAAGGTCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGGGGCGGTGCTGGTGGTGGCTGTGTTCCTTCATTTCCTCCGGAGACTCCTTCTGTTGAGCCGCTCCCTGGAGCTGGGATTGGGACTCCCATTTTTCCCGGTGGACTAGAGCGATGTGGTGTTGGATTAGAAGATTTGGAGAGTATGTGGACGGAATCGGCTGGACCAGAGCAGTCTTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGGATTAAAACTGTTTTGCAAAATGGGAATATCCCCTTCGATATGGATAGCAATGGCAGTATGGGAATTGTCGATCAGGGTTCCGAATTTGACCCCGCCGCTGCCGCTGCTGCTGGTAATGTTCTTTCTAATATCAATCCTAATTTATCGTTTCCTGTTGCTGCTGCGTGTACTGGGTTTTCTGATGTTAATGGTAGTAATAATAAGCCTTTTAGTAGAACAACTTACAAGAGTTCTTGTTTGGGGTTGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTTCTGGGTCTGTTGAGAATCTTGTTGTTCCTGTTTCTGCCATGATTTATCCTCCGCAGCTTCCGCCATTTGAGGCCCCTGATGAGAAGCCTCAGAATTTGAATGCTCAGGTTTTGTTGAACCAACATCAGCAGCACCCTCAGAATTCTAATTTTTTTGTGCCATTGGCATTTGGTCAACCGGAACAGCAGCTTCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGGGGTCGACCCGAACGGGGCGATCCCGAAAGTTCCGTTTATGGATCCAGGGAATGAAATGTTTCTGAGGAATCATCAGCAGGTGCTGCAGCAGCAGCAGCAGCTTGGATATCCATTGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTTGCCGAAGCCGAAAGTTATAGGGCTCGGCGACAACGAAATGGCATATCAGAATCCCCCACAGCAGCAACAGCAACATGCTTTGCTGGACCAGCTCTACAAGGCAGCAGAACTGGTTGGGACATGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTTCTCCTTGTGAACAATCCTGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTGTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCGGAGATCTCACCACTTATTCAGTTTGTGAATTTCACCTGTAACCAGGCACTACTTGAGGCCCTCGATGATGTCGATCGAATTCACATTGTTGATTTTGATATCGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAATTGTCCTTGAGGAACCAGGGTGCTCCATCACTAAAAATCACTGCTTTTGCCTCTCCCTCCACACACCATCCCATTGAACTCGGGCTCATGCGCGATAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTCGAGTTCGAAGTGGTGAACTTTGATTCTTTGAACCAAAACTCATTCTCCTTGCCGTTTTCTCGTGCAAGCGAAAATGAGGCTATTGCAGTAAACTTCCCTCTATGGTCCTCATCAAATCAACCAGCAATGCTTCCGTCTCTCCTCCGTTTCATCAAGCAGCTCTCACCAAAAATCGTGGTATCACTGGATCGAGGGTGTGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCAATCAACAAGATCGAGAGGTTTCTTTTGCAACCAAGAATCGAAAGCACTGTTCTGGGGCGGCTTCGAGTACCTGAAAGAATGCCCCTATGGAAGACGCTTTTCGCCTCAGCTGGGTACACGCCAGTAACATTCAGCAACTTTACCGAAACTCAAGCTGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCATGTCGAGAAACGCCAGGCTTCCCTTGTTTTTTGCTGGCAGCGTCGGGAGCTGATATCTGCTTCAGCTTGGAGGTGTTGA 2316 47.28 MRGIPFQFQGKGELEISAAFSSPICSGKWVKKGEQQQQQQQQQEAEEEAEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGAGGGCVPSFPPETPSVEPLPGAGIGTPIFPGGLERCGVGLEDLESMWTESAGPEQSFLRWIAGDVVEDPSLGIKTVLQNGNIPFDMDSNGSMGIVDQGSEFDPAAAAAAGNVLSNINPNLSFPVAAACTGFSDVNGSNNKPFSRTTYKSSCLGLNNRHGNFNVQNPIFSGSVENLVVPVSAMIYPPQLPPFEAPDEKPQNLNAQVLLNQHQQHPQNSNFFVPLAFGQPEQQLQPQLKRHNSSGGVDPNGAIPKVPFMDPGNEMFLRNHQQVLQQQQQLGYPLGLQFLPQQKAMLPKPKVIGLGDNEMAYQNPPQQQQQHALLDQLYKAAELVGTWNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLVNNPVNPPPPRCPTPCDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNQGAPSLKITAFASPSTHHPIELGLMRDNLTQFANDIGISFEFEVVNFDSLNQNSFSLPFSRASENEAIAVNFPLWSSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAINKIERFLLQPRIESTVLGRLRVPERMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVFCWQRRELISASAWRC 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4039432 4041747 + CmaCh06G007790.1 Cma06g00779 296333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00779 771 MobiDBLite consensus disorder prediction 63 102 - -
Cma06g00779 771 ProSiteProfiles GRAS family profile. 399 770 IPR005202 -
Cma06g00779 771 Pfam GRAS domain family 409 770 IPR005202 -
Cma06g00779 771 Coils Coil 30 50 - -
Cma06g00779 771 PANTHER SCARECROW-LIKE PROTEIN 6 41 770 - -
Cma06g00779 771 MobiDBLite consensus disorder prediction 63 85 - -
Cma06g00779 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 770 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00779 Cma17g00480 CCT
Cma06g00779 Cma16g01144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00779 Cma-Chr6:4039432 Cma08g00863 Cma-Chr8:5297563 1.17E-157 dispersed
Cma16g01144 Cma-Chr16:8784996 Cma06g00779 Cma-Chr6:4039432 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35205 PF03514 GRAS 6.30E-93 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00779 - - bhj:120090454 1235.32