Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00781 ATGGAGGAAGAAGAAAAGGCTGGGCCTCCCAATAAGGATTTGTACGCTCTGCTCCACATTTCACCTGAAGCTTCCGATGAAGAAATCCGAAAGGCTTACCGTCAATGGGCTCAAGTCTATCACCCTGATAAATATCAATCTCCTCAAATGAAAGATATTGCTACAGAGAACTTTCAGCGAATCTGTGAAGCGTACGAAATATTAACTGATGAGAATAGAAGACAAATATATGACATCTATGGCATGGAAGGATTGACTTCTGGTTTGGAACTTGGTCCAAAGTTGAATAAAGCAGACGAGATAAAGGAAGAGCTTGAAAGGCTACGGAAAAGGAAGGAACAAGAAAAAACTTCAGCACATTTTAGACCTTCCGGTACCATTCTAGCTAATATGTCTTTGCCACATTTTTTGAAGGGTGTTGGCATCATGAGAGGAATGGCCATGACAAGTGAAGTTCAGTCTCAAATATCAAAAAGTAATACCGTTGGAATAGGAGGAAATTTGGCAGTTACTGGGAATGCTGGTGGTGGGGCTGCTTCTGCTGTGTTTCGCCATCAATTTTCTTCAGTTTCTTCTGTGGAATTTATGGCTTCAGCTGGCTTAAGATCACTTATTGGGATGCAAGCATCTCGTCATCTTACATTGCACTCAACGGCAACAATGGGTATTTCAATGTCATTAAAAGATGGATCATTGAATTTGTCCAATGCTTGGACTCGCCAACTTTCTGAAACAACAAATGGAAATATACAACTTATTTTAGGTCCAGAGTCATCCGTTGCAGTTGGATGGCAGAAGAAAGAAGAGAAAAGGTCCGTTGCGGGAGAGGTGAAGTTTAGTACAAGTTCTTTTGGTGCATCAGCTCATTACACTCATCGCTTCTCTTCAAAGTCTCATGGCCGAATTGCTGGGAAAGTTGGAAGCACCATGCTTGAGCTTGAACTTGGTGGTGGGAGGAAATTATCCAAATTTAGTACTGTTCGGATGTTGTATTCAATCGGGATTCAGGGTATCTTTTGGAAGTTTGAGTTGCATCGTGGAGGTCAAAAACTTATTATTCCAATTCTGATTTCCAGGCATTTGAACCCCGTGTTTGCAGCTGGAGCGTTCCTATTTCCCACTTCAGCATACTTTTTGCTCAAGAAATTTATAGTAAAACCCTATTACCAGAGAAGGGAAAAACAGAAGGCTTTAGAGAACATGCAAAAAACTTCTGCTCAGGTGCGAGAAGCAAGAACCGCAGCAGAGAAAGCTCAACAGCTACTGCAAAATGTAGCCAACAGGAAAAGAAACAGGCAATCTGAAATTGGGGGACTTGTTATTACTAAAGCAATTTATGGAAATCAGAAGGCTTTGAAAAAGATGGATGAATTAAGCCCAAATGATGAATCTTCTCTAAGCGTCATAGATGTGACTTTGCCTCTAAACTTCTTGGTTAATGATTCTGGGCAGCTAAAGCTTCATAATGGGGTAAAGAAGTCGGGTATCATGGGATTTTGCGACCCATGCCCTGGAGAACCAAAACAGTTGTATGTTGAGTATACCTATGGTGACAAGACTTTTGAGGTGGTTGTGGATGATTATGAGGAGTTGCTAATACCAAGGCCATCGCAACAAGTCTAA 1623 41.28 MEEEEKAGPPNKDLYALLHISPEASDEEIRKAYRQWAQVYHPDKYQSPQMKDIATENFQRICEAYEILTDENRRQIYDIYGMEGLTSGLELGPKLNKADEIKEELERLRKRKEQEKTSAHFRPSGTILANMSLPHFLKGVGIMRGMAMTSEVQSQISKSNTVGIGGNLAVTGNAGGGAASAVFRHQFSSVSSVEFMASAGLRSLIGMQASRHLTLHSTATMGISMSLKDGSLNLSNAWTRQLSETTNGNIQLILGPESSVAVGWQKKEEKRSVAGEVKFSTSSFGASAHYTHRFSSKSHGRIAGKVGSTMLELELGGGRKLSKFSTVRMLYSIGIQGIFWKFELHRGGQKLIIPILISRHLNPVFAAGAFLFPTSAYFLLKKFIVKPYYQRREKQKALENMQKTSAQVREARTAAEKAQQLLQNVANRKRNRQSEIGGLVITKAIYGNQKALKKMDELSPNDESSLSVIDVTLPLNFLVNDSGQLKLHNGVKKSGIMGFCDPCPGEPKQLYVEYTYGDKTFEVVVDDYEELLIPRPSQQV 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4048619 4056644 - CmaCh06G007810.1 Cma06g00781 296335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00781 540 CDD DnaJ 13 70 IPR001623 -
Cma06g00781 540 Pfam DnaJ domain 13 78 IPR001623 -
Cma06g00781 540 Gene3D DnaJ domain 3 117 IPR036869 -
Cma06g00781 540 PRINTS DnaJ domain signature 15 33 IPR001623 -
Cma06g00781 540 PRINTS DnaJ domain signature 33 48 IPR001623 -
Cma06g00781 540 PRINTS DnaJ domain signature 53 73 IPR001623 -
Cma06g00781 540 PRINTS DnaJ domain signature 73 92 IPR001623 -
Cma06g00781 540 Pfam DnaJ-like protein C11, C-terminal 387 534 IPR024586 -
Cma06g00781 540 SUPERFAMILY Chaperone J-domain 9 77 IPR036869 -
Cma06g00781 540 SMART dnaj_3 12 73 IPR001623 -
Cma06g00781 540 Coils Coil 95 118 - -
Cma06g00781 540 ProSiteProfiles dnaJ domain profile. 13 81 IPR001623 -
Cma06g00781 540 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Cma06g00781 540 Coils Coil 391 435 - -
Cma06g00781 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 539 IPR042162 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00781 K09531 DNAJC11; DnaJ homolog subfamily C member 11 - csv:101219828 989.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00781 Cma16g01139 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00781 Cma-Chr6:4048619 Cma18g00131 Cma-Chr18:657426 2.53E-15 dispersed
Cma16g01139 Cma-Chr16:8748571 Cma06g00781 Cma-Chr6:4048619 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g538 Blo02g01041 . . Bda08g00579 Bpe05g00578 . . . Cmo06g00801 Cmo16g01191 . . . . Sed04g1713 Cpe14g00943 . Bhi11g00191 Tan01g2031 Cmetu06g0830 . . Mch10g1566 . Cla10g00256 Cam10g0262 Cec10g0270 Cco10g0268 Clacu10g0264 Cmu10g1107 Cre10g0515 Cone8ag0398 Cone12ag0383 . . Lsi07g01301 . . Cme06g02570 . . . . . . Bma05g00764 . . . . Cma06g00781 Cma16g01139 Car06g00695 Car16g01074 Cpe08g00742 . . . . . . . . . . . . . . . . Csa03g00274 Chy06g02048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007265 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00781 Cma_Chr06 FPKM 18.373522 19.247597 10.320661 10.527276 18.835684 15.52451 17.292028 18.293095 18.158495 18.070122