Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00788 ATGGAAGATTTTGGTATCATGTCTGGGTTGGTGGCCGTGCAGTTTGTGTATGCAGGGAACTCTGTTTTCATGAGCTTTCTCATGTCTTTAAGCATTGATCCATTAACTCTCATCATCTTCACAACCTTCTTCACTTTTCTCATTGTCTCTCCCGTTGCTCTTTATTTCGAAAGGTCGAATTGGCCTACGAAACTTAGTCTAAAGTTGATATCTCAGATTCTTCTCATATCCTTTGGAGGGGTTACATTGTTTCAGTCCCTTTTTCTTAAAGGAATACAGCTAACTTCGCCGTCAGTAGCGACTGCCATGCCGAATCTCGCCCCGGGACTCATTTTTGTTATTGCTTGGATCTTTAGATTAGAAAAAGTTCGGCTAAGTTGTATCTATAGCAAGATCAAGATTTTAGGTACATTTCTCTGTGTGATAGGCGCATTCACCATGAGTATAATGCACAGCACTTTGTCGGATGCAGCTGCAAATGTCGGACGACGTCCGGCGGATCAAGCGTTTGATGAACAAAAGATCGTCGGTTGTGTGTATCTCATCTCGGCGGTAGTCGTTTTATCTAGCGTAGTTGTTCTTCAGGCATCGACACTAGGAGATTTCCCGACACCGATGTCGTTGTGTGCAATAACGTCGCTCGTTGGAGTGCTCATAACCATAGTTATACACATAGCTCTATATCAGAAACTTGAAATTGGTTGGTCATATCTGAGTGTTGAAAAATTGATAGCCTATTGTGTTCTAAGCGGAACCGTTAGCGGGGCTTGCGTGAGCTTCAACGGGTGGGCGATGAAGAAACGAGGGCCCGTTTTGGTGTCGATGTTTAGTCCGATTGGAACCGTTTGCTCACTCGTTCTCTCAGTTTTCACTTTGGGAGAACCCATCAACATTGGAAGCCTTGTTGGTATGTTCCTCATGTTCACCGGCCTCTACTTCGTGCTATGGGCGAAACGGAAGGAAGGTTACGCCAACCGAAACCGCCCCGAGAAAGCTTGA 999 45.05 MEDFGIMSGLVAVQFVYAGNSVFMSFLMSLSIDPLTLIIFTTFFTFLIVSPVALYFERSNWPTKLSLKLISQILLISFGGVTLFQSLFLKGIQLTSPSVATAMPNLAPGLIFVIAWIFRLEKVRLSCIYSKIKILGTFLCVIGAFTMSIMHSTLSDAAANVGRRPADQAFDEQKIVGCVYLISAVVVLSSVVVLQASTLGDFPTPMSLCAITSLVGVLITIVIHIALYQKLEIGWSYLSVEKLIAYCVLSGTVSGACVSFNGWAMKKRGPVLVSMFSPIGTVCSLVLSVFTLGEPINIGSLVGMFLMFTGLYFVLWAKRKEGYANRNRPEKA 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4113634 4115375 - CmaCh06G007880.1 Cma06g00788 296342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00788 332 PANTHER WAT1-RELATED PROTEIN 7 326 IPR030184 GO:0016021|GO:0022857
Cma06g00788 332 Pfam EamA-like transporter family 177 315 IPR000620 GO:0016020|GO:0016021
Cma06g00788 332 Pfam EamA-like transporter family 5 148 IPR000620 GO:0016020|GO:0016021
Cma06g00788 332 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 148 - -
Cma06g00788 332 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 320 - -
Cma06g00788 332 PANTHER OS11G0588100 PROTEIN 7 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00788 Cma-Chr6:4113634 Cma18g00826 Cma-Chr18:7215575 4.13E-43 dispersed
Cma15g01119 Cma-Chr15:7136051 Cma06g00788 Cma-Chr6:4113634 5.94E-10 wgd
Cma02g01537 Cma-Chr2:8740312 Cma06g00788 Cma-Chr6:4113634 5.60E-139 wgd
Cma02g01537 Cma-Chr2:8740312 Cma06g00788 Cma-Chr6:4113634 5.60E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00788 - - csv:101220774 484.952