Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00796 ATGGAAGATCCTCTTCAAAGATTCCAGTTTCAGTCGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGAAACGACGGCAAACATCCGACATATCGTGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCCGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGCACATTTTCCACTCCCGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCACTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGCTTCCCCCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCCGCCGCAGCCAAAGCCGCGACGTTTCCCATTAATTCCACTGATGAAGACGACGACGACGATGACGCCGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCCGGAGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCTCCGCCACTCCTCCTTGA 627 54.39 MEDPLQRFQFQSSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQMLPIDGFDSAFGRPPSPSEYFSATPP 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4176468 4177094 - CmaCh06G007960.1 Cma06g00796 296350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00796 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 13 179 - -
Cma06g00796 208 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cma06g00796 208 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Cma06g00796 208 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Cma06g00796 208 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Cma06g00796 208 MobiDBLite consensus disorder prediction 18 38 - -
Cma06g00796 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 179 - -
Cma06g00796 208 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Cma06g00796 208 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Cma06g00796 208 MobiDBLite consensus disorder prediction 1 17 - -
Cma06g00796 208 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Cma06g00796 208 MobiDBLite consensus disorder prediction 1 39 - -
Cma06g00796 208 MobiDBLite consensus disorder prediction 118 157 - -
Cma06g00796 208 Pfam AP2 domain 35 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00796 Cma-Chr6:4176468 Cma05g01358 Cma-Chr5:10234374 1.78E-45 dispersed
Cma16g01125 Cma-Chr16:8654856 Cma06g00796 Cma-Chr6:4176468 1.54E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35206 PF00847 AP2 4.40E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00796 - - cmos:111449391 352.443