Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00798 ATGATGTCTTCCAAACACGACAACCTTAGTTTGAGCCTTGGATTGAGCTTTGATTCTCATTATTTGCAGCTCAATCTCCGGCCTTCTTGGAATGATCATGCCTCATCAGATCGGACATCGGAAAACCGGATGCCACCATCGCCGGTGGATTGCGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGTGTCGAGTCCTAACAGTACGGTTTCGACTGTGAGTGGTAAGAGGAGTGAACCAGAAACCAACAACGGCGAGGATCTCGACGGCGATGAAGAAGACGCTGAAACTTCTAGAAAAAAACTTCGTCTCACTAAAGATCAGTCCGCCGTCTTGGAAGACAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGCTAGCGTTGGCTAAACAATTGGGTCTCCGGCCACGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTTGACTGTGAGTTTCTAAAGAGATGCTGCGAGAATCTAACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGGCCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGCGTGGCGGTCCCATCCTCCACGTCGGCTCCACTTAACGTAACCAGAATGGGCCCGGCTCAAGCCCAAGCCCAATCCAAGGCCCTTCACGCGCGGCCTATCCATGTCAACCCGTGGGCCCCCGCCATCCCGGCCCGGCCCTTTAACGCTCTCCACCCTCGCTCGTAA 798 52.76 MMSSKHDNLSLSLGLSFDSHYLQLNLRPSWNDHASSDRTSENRMPPSPVDCEEEEEEEEAAVSSPNSTVSTVSGKRSEPETNNGEDLDGDEEDAETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMAPPTTLTMCPSCERVAVPSSTSAPLNVTRMGPAQAQAQSKALHARPIHVNPWAPAIPARPFNALHPRS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4195958 4197517 + CmaCh06G007980.1 Cma06g00798 296352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00798 265 Pfam Homeobox associated leucine zipper 154 188 IPR003106 GO:0006355|GO:0043565
Cma06g00798 265 Coils Coil 153 190 - -
Cma06g00798 265 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Cma06g00798 265 CDD homeodomain 98 155 IPR001356 GO:0003677
Cma06g00798 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 33 254 - -
Cma06g00798 265 Pfam HD-ZIP protein N terminus 42 80 IPR006712 GO:0005634
Cma06g00798 265 Gene3D - 89 159 - -
Cma06g00798 265 SUPERFAMILY Homeodomain-like 92 155 IPR009057 -
Cma06g00798 265 MobiDBLite consensus disorder prediction 62 78 - -
Cma06g00798 265 MobiDBLite consensus disorder prediction 29 101 - -
Cma06g00798 265 PRINTS Lambda-repressor HTH signature 125 134 IPR000047 GO:0003677
Cma06g00798 265 PRINTS Lambda-repressor HTH signature 134 150 IPR000047 GO:0003677
Cma06g00798 265 PANTHER - 33 254 - -
Cma06g00798 265 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Cma06g00798 265 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Cma06g00798 265 SMART halz 154 197 IPR003106 GO:0006355|GO:0043565
Cma06g00798 265 SMART HOX_1 96 158 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00798 Cma-Chr6:4195958 Cma14g02146 Cma-Chr14:14697711 4.63E-82 dispersed
Cma16g01122 Cma-Chr16:8618431 Cma06g00798 Cma-Chr6:4195958 4.86E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35208 PF00046 Homeodomain 7.40E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00798 K09338 - csv:101223208 369.777