Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00800 ATGCATATTGAGGAATTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAAATTCAGGTGCTATTGTAAGTTATTTGGAGGACCAGAGCGTTATTAGATCTGATGTTAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGCGTTGGAGGAGTGATAACACTAAATGAACCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATTATGACATTGATCATCTGACCATTCCAACTAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTACTAATTTCATCCACAAAAATGCATCGCACGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAACACGTGAAGTCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACATGGTTGTTCAGAAGGATGTTTCCTTCTGTCACATAGATGATCTAGGAAAGAAAGTATCTGGATCATCACATGATCTTATCACATTTGATGATAGTTCTGTAGTTGTTGTAAAAGGATCTGATCTCGAAGGATATGACCCAAGTATCAGCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTGGTCTGCAGAGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGATTCTCCTGTTTGTGGCTCAGCTATCGAGAAAAACACCATAGCAAGAAAATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTCAGTGCTGCTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1002 43.21 MHIEELKEGELQSGEEGNSGAIVSYLEDQSVIRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVGGVITLNEPYETLVPSTLYRDYDIDHLTIPTRDYCFAPLLSDICIATNFIHKNASHGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHMVVQKDVSFCHIDDLGKKVSGSSHDLITFDDSSVVVVKGSDLEGYDPSISQSEMGDIWADLSVVCRVRVAGQAALTRFSCLWLSYREKHHSKKISGDDLGVGKGCSLSAAHLEGFSVDIHVY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4205467 4210076 + CmaCh06G008000.1 Cma06g00800 296354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00800 333 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Cma06g00800 333 CDD PTPMT1 68 210 IPR044596 GO:0004721
Cma06g00800 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Cma06g00800 333 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 333 - -
Cma06g00800 333 Pfam Dual specificity phosphatase, catalytic domain 112 210 IPR000340 GO:0008138|GO:0016311
Cma06g00800 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 62 214 IPR029021 -
Cma06g00800 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
Cma06g00800 333 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
Cma06g00800 333 Gene3D Protein tyrosine phosphatase superfamily 68 219 IPR029021 -
Cma06g00800 333 PANTHER - 1 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01379 Cma-Chr5:10345158 Cma06g00800 Cma-Chr6:4205467 4.06E-99 dispersed
Cma06g00800 Cma-Chr6:4205467 Cma12g01280 Cma-Chr12:9944620 2.53E-94 dispersed
Cma16g01120 Cma-Chr16:8607615 Cma06g00800 Cma-Chr6:4205467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00800 - - csv:101222975 605.905