Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00803 ATGATGTACGGACAGAGTAATAGCTCTGAATCGGATTTTGTTCTTCTCGAATCCATACGCCGCCATTTGTTGGTAGATTCTGACTCTCTCCGATGTGGGAATTTCGCCGTCGCTGGAGCCACCGCCCCTGTTTTCTGCCGGACCTCCAGTTTCGGAAGCTTGTACCCTTGTTTGACTGAAAAATGGGGTGCTCTGCCTCTCAGAGAGGATGATTCCGAGGACATGGTTCTCGCCGGAGTCCTCCACGACGCTGTTCAGTTCGGCTGGGTTCCCTCGCTTGGATCTTCCTTGCCGGAGACTTTCAATTTTGGTTTCTCCGATGTCAAGCCTGAGCCTGAGATTCTCCCGCCAGTGAACATCTTGCCGGAAGTTATCGAGACGAAGGTGGCGGTGGCAGTGGCAGATCCGTTGCCGGCGGTTGTTCCTGGGAAGGGGAAGCATTACCGGGGAGTCAGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGATCCGGCGAAAAATGGGGCTCGGGTTTGGCTTGGGACATTTGAGACAGCGGAGGATGCAGCGTTGGCTTATGACCGAGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTTAATTTCCCGCTTCGAGTTAATTCTGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGTCCCGGTCGTCACCGGAGCCCACTTCTTCGTGTACGTCGGTGGAGAGTGGGTCCCCTAAGAGGCGGAAGAAGACAGACGGCACGACAATGCCAACGGCTCAAGCTGCGCCGGAGTCGATACAATTAGGGGAGGGGACCAATGCAATACAAGTGGAAACTGACGTGGCAAAGTACACATGTGGCGAGCAATGA 864 55.79 MMYGQSNSSESDFVLLESIRRHLLVDSDSLRCGNFAVAGATAPVFCRTSSFGSLYPCLTEKWGALPLREDDSEDMVLAGVLHDAVQFGWVPSLGSSLPETFNFGFSDVKPEPEILPPVNILPEVIETKVAVAVADPLPAVVPGKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSCTSVESGSPKRRKKTDGTTMPTAQAAPESIQLGEGTNAIQVETDVAKYTCGEQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4229848 4230711 + CmaCh06G008030.1 Cma06g00803 296357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00803 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 37 250 - -
Cma06g00803 287 MobiDBLite consensus disorder prediction 216 240 - -
Cma06g00803 287 CDD AP2 146 205 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 MobiDBLite consensus disorder prediction 252 271 - -
Cma06g00803 287 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700|GO:0006355
Cma06g00803 287 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677
Cma06g00803 287 MobiDBLite consensus disorder prediction 208 271 - -
Cma06g00803 287 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Cma06g00803 287 PANTHER DNA-BINDING DOMAIN 37 250 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00803 Cma-Chr6:4229848 Cma16g01116 Cma-Chr16:8582031 9.09E-139 dispersed
Cma17g01351 Cma-Chr17:9039745 Cma06g00803 Cma-Chr6:4229848 7.26E-29 dispersed
Cma06g00802 Cma-Chr6:4221673 Cma06g00803 Cma-Chr6:4229848 1.96E-30 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35210 PF00847 AP2 1.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00803 K09286 - csv:101203663 418.698