Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00805 ATGTTTGCCCGCCGGTTCCATTGTTTCTGTAATAGAGATCTGGTAGATTTTTTCATCATTCTTAACAAATCTCTTGCAAAGTTCAAGATGTGCCATGATAACTTCCACGTTCATTCCTTAGAAGAGGCAACTACAGCTGAAGATAGTCTCCTAATATATTGCAAACCAGTTGAACTATATAACATTCTTCATCTTCGTTCCCTTAACAATCCTTCTTTTCTTCGACGTTGTTTGCATTACAAACTACAAGCTAGGCGAAAAAAGAGGGTGAGCACTGGAGTTGTAATTTTCAACTATAGGGACTACAACAACATAGTACGAAAAACTGAAGTGACTGAAGACTTCTCATGCCCATTTTGTTTGATGCTATGCGCAAGCTTTAAGGGTTTGCGGTACCACTTAGGCTCTTCCCATGATATGTTCAACTTCGAATACTGGGTGACTGAAGAATATCAGGCAGTGAATGTCTCTGTGAAAATTGATGTCTTTAGACCTGAGACTGTAGCAGATGGGGTGGACCCACAACTTCAAACTTTCTTCTTGTGCACAAGACCACGAAGCCGTAAGTTGAAGAACTCTGTTCAGAGTGGGAAATATGTGCAGTTCTTGGAGATGGACTCAGCTAGACCTTCCACAGAAGGCATGCCTAAGGGATTTATTGAGCATAACGCTGATGGTGTATCCTGTGAAAAAGAGGGCAGCCATTCATTCCCCATTGAGGCTTATTTGCAGAATGCACAACAAGGAGAAAATATTGGTCTTGAATGTCCTTCCTCTATGGAGTGCATTGAACATGTTGCATCCAGCTCAAATATTCCAGGTGTCTCAATGGTTATCAGTCAATCTTCTACGGGTCCTGAATGTTATAAAGTACTATCTGGAAGTGATCATTTACATCCAGCCAAAGCAAGGAAGTTAACGGTAGAACGAGACCCAAAAAACCGCATGCTTTTGCAGAAACGGCAGTTTTACCACTCTCACCGGGTTCAGCCTATGGCACTAGATAAAGTATTATCCGACAAAGATAGTGAGGATGAAGTGGATGATGACATTGCAGATTTTGAAGACCGAAGGATGCTCGATGATTTCGTGGATGTGACCAAAGATGAAAAACGGCTTATGCATCTATGGAACTCCTTTGTTCGAAAGCAAAGGGTGCTAGCTGATGGTCACGTTCCTTGGGCATGTGAAGCATTCTCAAAACTTCACGGCAAAGAACTTGTCTCATCTCCGGCTCTCTTTTGGTGTTGGAGGTTTTTCATGATCAAACTCTGGAATCATGGTCTTCTTGATCCTTCTACCATGAACAACTGTAATTTAACTCTTGAAGGATTCAAAGATGAGAGTTTTGATGCAACGGAGAATGGGAGAAGAGAGATTGATTAA 1386 41.63 MFARRFHCFCNRDLVDFFIILNKSLAKFKMCHDNFHVHSLEEATTAEDSLLIYCKPVELYNILHLRSLNNPSFLRRCLHYKLQARRKKRVSTGVVIFNYRDYNNIVRKTEVTEDFSCPFCLMLCASFKGLRYHLGSSHDMFNFEYWVTEEYQAVNVSVKIDVFRPETVADGVDPQLQTFFLCTRPRSRKLKNSVQSGKYVQFLEMDSARPSTEGMPKGFIEHNADGVSCEKEGSHSFPIEAYLQNAQQGENIGLECPSSMECIEHVASSSNIPGVSMVISQSSTGPECYKVLSGSDHLHPAKARKLTVERDPKNRMLLQKRQFYHSHRVQPMALDKVLSDKDSEDEVDDDIADFEDRRMLDDFVDVTKDEKRLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGKELVSSPALFWCWRFFMIKLWNHGLLDPSTMNNCNLTLEGFKDESFDATENGRREID 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4246880 4267599 - CmaCh06G008050.1 Cma06g00805 296359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00805 461 Pfam VEFS-Box of polycomb protein 310 439 IPR019135 -
Cma06g00805 461 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 30 92 - -
Cma06g00805 461 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 89 452 - -
Cma06g00805 461 PANTHER POLYCOMB GROUP PROTEIN 30 92 - -
Cma06g00805 461 PANTHER POLYCOMB GROUP PROTEIN 89 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00366 Cma-Chr4:1815858 Cma06g00805 Cma-Chr6:4246880 2.90E-13 dispersed
Cma06g00805 Cma-Chr6:4246880 Cma16g00223 Cma-Chr16:1013170 7.47E-12 dispersed
Cma06g00805 Cma-Chr6:4246880 Cma16g00222 Cma-Chr16:1005804 3.05E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00805 - - cpep:111801089 885.56