Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00812 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCTCGATGGAGGACGAAGGGAAGTCTTGCAAACTATACTCCTCTTCATGCTCGGGCAGATCCTGATGAGTACGATGATAAAAGGCTCTCTAGGTTGAAGAACTCGTCCATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCATTATCAAGATCATGAAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCAAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGACCCTCACAGTCGACAGCTTGGGAGTCGATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCATCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCGTACTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGTCATGGAAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAGGAGGAGTCGGAAGCAAGCTCATTTTCAGTTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAATGGACAGGCGTTCTTGCAGGAACAAATCAAAAAGGACAGGCCTCAATTGGAAAAAGTGCAAGCGCTTGGGAATCATAATTCGCCTCTCTGTAATATCGATCTAACTGTCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGTGTGAAGATCAACGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCTGGGTGCGAAAAGAGAAGACTGCAAGACGTTGAGTCGACTCGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAATACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGCTCAAAACAAAAAGTTTTCAGAAACAAGGATTACAATGATGAGTCCGAGAAGGGTGACGACGAAGACTAGCGTAGAAAGCAAGGAACTCATTGACGACAGTTGTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTTTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATGTGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1533 43.84 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSMYKNKEVKLLKRKHYQDHEVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDHPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSFSVDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQLEKVQALGNHNSPLCNIDLTVILNFREFTKQLTCEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFLGAKREDCKTLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDAQNKKFSETRITMMSPRRVTTKTSVESKELIDDSCCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDVRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4321699 4326916 + CmaCh06G008120.1 Cma06g00812 296366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00812 510 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cma06g00812 510 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cma06g00812 510 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Cma06g00812 510 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Cma06g00812 510 PANTHER GATA TRANSCRIPTION FACTOR 26 1 509 - -
Cma06g00812 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cma06g00812 510 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Cma06g00812 510 Pfam Asx homology domain 276 365 IPR028020 -
Cma06g00812 510 Gene3D - 276 372 IPR038108 -
Cma06g00812 510 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cma06g00812 510 MobiDBLite consensus disorder prediction 103 157 - -
Cma06g00812 510 MobiDBLite consensus disorder prediction 110 149 - -
Cma06g00812 510 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00812 Cma-Chr6:4321699 Cma08g00452 Cma-Chr8:2542479 2.75E-08 dispersed
Cma16g01108 Cma-Chr16:8519568 Cma06g00812 Cma-Chr6:4321699 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma06g00812 Cma-Chr6:4321699 0 wgd
Cma02g01569 Cma-Chr2:8903251 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35211 PF13919 ASXH 1.80E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00812 - - csv:101205985 839.336