Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00821 ATGCTCCGACCTTCATTTCAATGTCGTAATTCATCTATAACACAGAAATTTCGAAATTCGGAAATTCTATGTTCGAAATCCGAGCAAAAGCCTCATAAATTTCCCCAGTCAACGCTCGTCTCGCCAGCCTTTGTCCCTGAATTCGTTACTCCGATCTCAGTCACCTGTAGTAGCATCTGGGTTCGGCAATTCTTTGCCATTTCTCAGATGGGTCGTAAGCAAATCGACCAAGAAGCCTCTCGTTTAACCCTACCGATCCTAATTTTGGTTAGTTTCATCTCCTGCGCCGCCGTGTACACGTTTCTCCCTTTTTTGTTCAGACTCAACGGCGGCGATCCTTCGAAACTTGAATCGTTCGCAGTGATTAGAGATGGTGACGCCGGAAATTTGGAAGGTGGAGCCGAGGAATGTTGCCGGGGAATCGAGAATTTGGAGTATTGGGGTCCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCTGAGCTGTGTTGTAAGGCTTGTAAAGCTATGTGCAACGGCAATGATGGGCCTTGCTTGTGTGATACTTGGGTGTATTGTGGAAATCGAACGGAATGTGGTTCAAAATTTGGTGAATGCTGGTTGAAGAAACAGAAGGATACATTGGCTCCTGATCGGCAGGAAGGAGGGACAACAAGTATTTGGACTTCTGGGCTTATCTTTGGAAGAGGAGAGGGAATCGTTGCGTTGGAGACCGACCATGGCACGCTTCATATCAAGCTCTTCCCCGACTGTGCTCCCCATTCTGTTGCCTACATTCTTGAGTTGTTGGAATTACGACATTGCGCTGGTTGCCACTTCTACCGTGCCGAGGGTCGAGGCCAATCTTGGGACTCGAAAGGAAACCCCATAGAAAACGCTCCTTTAGGTCCTCCTTTTGCACTTATTCAAGGAACACTGGAAACCCAAGGGGAACCATTTAAGAAAATTTCCCCTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTAGCGTGGGTTGGTTCGGGACCCGAATTCTTCATTAGTCTTGCAAACCACCAAGAATGGAACAAAGTGTACACGGTGTTCGGTTCGGTTCTCCCAGAAGACATGGAAGTTGCAGAGAAAATTGCTGGACTTCCTACCAAGCCTGACGTTTGGAACAATGTCAATGTTTCGGTGTTGCAAGAACACGTTCCGTTGCGCCTATCGTCGGTCGGCATAGCAGTTTATCGGCGACGCCTCCTCAGTTTTCCTCACAGTCGCCGGGAAGAGCTGCCAGCCGCCGCTAGTGGTGACTGTCCGCCCTTTGCTGTTTGCTCTGTAGCTATCTCTTTCTCGCACAAAACGCAGACGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCAGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGACGATGCTGAAAAATATGATATCGAAGCCCTTAATGGTAATGAATCAGAAGTCATTGAATTGGATCTGATGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGTAGTAGTAGTAGTAGTGAATCAGAGTCTGAAGAGAGTAGTGATGATAGCATTACAAGTGACAACAATGACAATGACAATGAAAAGAGTGACACTCAGAATACTGACCGTGGGAATCGATTGTCAGTTAAACTCAAAAGATCGAAGTCTAGAAGAGCCAATTGTAGAAGTGAAAGCAGAGAAAAAGGATCTCACCTGCAGAAGGCCGAGAGAATCCAGCTAACATTCGTAGGAATGTTGTTTTACCTGAACCATTGGTCCCGAGAAATGGCGATGAGTGCATCCAGCGATCCGCAACTGGAGACCGACGGCGGCGGCAGCGGCGGCGGAGAGGGATATAAGAGAGAGGAAAGAAATTAG 2004 46.81 MLRPSFQCRNSSITQKFRNSEILCSKSEQKPHKFPQSTLVSPAFVPEFVTPISVTCSSIWVRQFFAISQMGRKQIDQEASRLTLPILILVSFISCAAVYTFLPFLFRLNGGDPSKLESFAVIRDGDAGNLEGGAEECCRGIENLEYWGPAVKWGSEFKFNSSELCCKACKAMCNGNDGPCLCDTWVYCGNRTECGSKFGECWLKKQKDTLAPDRQEGGTTSIWTSGLIFGRGEGIVALETDHGTLHIKLFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTLETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVAEKIAGLPTKPDVWNNVNVSVLQEHVPLRLSSVGIAVYRRRLLSFPHSRREELPAAASGDCPPFAVCSVAISFSHKTQTRKMRHASKDLLCLERKDLPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSKSRRANCRSESREKGSHLQKAERIQLTFVGMLFYLNHWSREMAMSASSDPQLETDGGGSGGGEGYKREERN 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4408161 4420381 - CmaCh06G008210.1 Cma06g00821 296375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00821 667 PANTHER EXPRESSED PROTEIN 70 399 - -
Cma06g00821 667 Pfam NOP protein chaperone 1 471 579 IPR027921 GO:0000492
Cma06g00821 667 MobiDBLite consensus disorder prediction 640 667 - -
Cma06g00821 667 MobiDBLite consensus disorder prediction 600 615 - -
Cma06g00821 667 MobiDBLite consensus disorder prediction 570 591 - -
Cma06g00821 667 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 236 384 IPR002130 GO:0000413|GO:0003755
Cma06g00821 667 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASES 70 399 - -
Cma06g00821 667 SUPERFAMILY Cyclophilin-like 232 388 IPR029000 -
Cma06g00821 667 Gene3D - 230 393 IPR029000 -
Cma06g00821 667 MobiDBLite consensus disorder prediction 547 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00821 - - - csv:101206948 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00821 Cma-Chr6:4408161 Cma14g01917 Cma-Chr14:13531184 1.16E-121 dispersed
Cma06g00821 Cma-Chr6:4408161 Cma12g00525 Cma-Chr12:2725255 4.50E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g548 . Blo03g00135 Bda06g01307 . Bpe05g00546 Bpe07g00199 . . Cmo06g00844 . . . . . Sed07g0533 . . Bhi11g00085 Tan01g2109 Cmetu06g1674 . Hepe06g1082 Mch10g1601 . Cla10g00208 Cam10g0216 Cec10g0221 Cco10g0221 . . Cre10g0470 . . Cone6ag0632 . Lsi07g01250 . . Cme06g02522 . . . . . . . Bma12g00189 . . . Cma06g00821 . . . . . . . . . . . . . . . . . . . . Csa03g00225 Chy06g02096 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002040 1 3 2 3 3 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 3 2 3 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00821 Cma_Chr06 FPKM 13.619879 18.127201 14.540443 14.476274 11.188368 9.418458 9.607634 10.91373 10.850735 10.809297