Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00823 ATGGAGGATCGGTATGAACCATTGAAGGAACTTGGCTCTGGAAATTTTGGAGTTGCTAAGCTCGTTAGAGACAAGAACACCAACGAGCTTGTTGCTGTCAAGTACATTGAGAGAGGGAAAAAGATTGATGAGAAAGTTCAGAGGGAAATCATTAATCATCGATCGTTGCGGCATCCCAACATTATCAGATTCAAGGAGGTCTTCTTAACTCCAACTCACTTAGCCATTGTCATGGAATATGCAGCTGGAGGAGAGCTTTTCGGACGAATATGCAGCGCTGGTCGGTTTAGCGAAGACGAGGCAAGATTTTTCTTCCAGCAGTTAATATCAGGAGTCAGCTACTGTCATTCCATGCAAATTTGTCACAGGGACCTGAAACTCGAAAATACGCTCTTGGATGGAAGTCCTACCCCGCAGCTCAAGATATGCGATTTCGGTTACTCAAAGTCTGCTTTATTGCACTCGCAACCGAAATCGACTGTTGGGACGCCTGCATACATCGCACCGGAGGTTCTAGCACGGAAGGAGTATGATGGCAAGATTTCAGATGTTTGGTCATGTGGGGTGACATTATATGTGATGTTGGTCGGAGCATACCCGTTTGAGGACCCCAAAGATCCGAGAGATTTTCGTAAGACGATATCGAGGATATTGGGTGTTCAATACTCCATTCCGGATTACGTTCGTGTGTCCATGGAGTGTCGCAACCTACTTTCTAGAATTTTCATTGCGAACCCAGCAAAGAGGATCACCATCCAAGAGATAAAACAGCTGCCATGGTTTTTCAAGAACTTGCCAAAGGAGCTAATTGAGATTGAGAAAACCAACTTCAAACGACAAGAACACGACCACCCATGGCAGAGCGTCGAGGAAATCATGCAGATTGTTCAGGAAGCAATGACACCAGGAGAGGGATCTAATGTTGGGGACCGAGCGTTGGGCGGAGGGTCGGGGCTCAATGATCTGGACGCCGATATAGCTTCGGAAGTAGATAAGAGTTTATTGTGTATGAAAACATATGGTGTCAAAACAAAATCACATTGTATAGAGAAAATAGAAGGCATGGAAGATTGTGGGGGAAGCTGCATTGACTGCCCAAAACATGTTCATTGTATCAACAAAAGTGCCCTTTGTTTTGGTGATGAGAAGGAATGCTGTCTGATTCAAAGTTCTTGA 1176 44.9 MEDRYEPLKELGSGNFGVAKLVRDKNTNELVAVKYIERGKKIDEKVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPQLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLARKEYDGKISDVWSCGVTLYVMLVGAYPFEDPKDPRDFRKTISRILGVQYSIPDYVRVSMECRNLLSRIFIANPAKRITIQEIKQLPWFFKNLPKELIEIEKTNFKRQEHDHPWQSVEEIMQIVQEAMTPGEGSNVGDRALGGGSGLNDLDADIASEVDKSLLCMKTYGVKTKSHCIEKIEGMEDCGGSCIDCPKHVHCINKSALCFGDEKECCLIQSS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4433702 4437548 - CmaCh06G008230.1 Cma06g00823 296377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00823 391 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Cma06g00823 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Cma06g00823 391 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00823 391 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00823 391 CDD STKc_SnRK2 4 260 - -
Cma06g00823 391 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00823 391 PANTHER SERINE/THREONINE KINASE 3 329 - -
Cma06g00823 391 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Cma06g00823 391 SUPERFAMILY Protein kinase-like (PK-like) 3 286 IPR011009 -
Cma06g00823 391 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Cma06g00823 391 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00823 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101207431 623.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00823 Cma16g01101 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00823 Cma-Chr6:4433702 Cma11g01769 Cma-Chr11:11836336 0 dispersed
Cma16g01101 Cma-Chr16:8475054 Cma06g00823 Cma-Chr6:4433702 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68641 PF00069 Pkinase 1.40E-71 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00823 Cma_Chr06 FPKM 2.120086 2.393631 61.498802 65.760101 11.267551 10.907055 12.569319 19.64002 22.463686 19.945539