Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00826 ATGGCGTTTTCTAAGCTTCTCCCTGAATTCTACGAAGGGTTTGCTATGACTCAGGCGAGTTATTTGCTTTCGCGTTTTCCGTTTCTTATGTCATCGGCTTCGTTTTCTGTTCCTTTCGCAACTAAATCACTTGCTTCACAAATCTTCCGCCATTTTCGTTGTCGCGAGTTGCTTCGAGTTCACTTGCGATTACTCATCCTCCTCTCTTTGCCTTTCATTTACTTCTTTTTCTCGAACCCTCGTCGTTCCGTTGTTCTCAAGTTGTTCGTCGTGCTTTTCTTCTCCATCGCCGCCTTGATTATTCTCAATCTTGCAGTCCCGCGTCTCCCCTCTTCGATTCGTCTGTTTCTTGTTCGATCATCTCCAATTAACGCGTTCTCGTCTTCTGCTGCGACGAAGGCTGTTTCGAATGTTCGTTGGTCGATCGGATCGAAGCCCAAATCGGAGAAATGGAAGATGTCGGGTTCTTGGGTGAGATTTAACAGTAATGGAGACATTTATGAGGGGGAATTTCACAAAGGGAGGTGCTCTGGGAGCGGGGTTTATCACTACCATATGAGTGGAAGGTATGAAGGTGATTGGATTGATGAGAAGTACGATGGATATGGCGTTGAGACATGGGCGAAAGGAAGTAGGTACCGTGGCCAGTACAGACAAGGGTTGAGGAATGGGATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAACGGGCAGTGCCATGGCTGTGGAGTTTATACTTGCCAAGATGGGAGCCGTTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTTCAGAAATGGAGACACATATGCAGGAGAGTATTTTGCAGACAAGATGCATGGTTTTGGAGTTTATCGATTCGGCAATGGACATCGTTACGAGGGAGCTTGGCACGAAGGAAGCAAGCAAGGGCTTGGAATGTACACCTTTAGGAATGGAGAGACACAATCTGGTCATTGGCAAAATGGGATTCTTAATGCTACTGTTCTTGAAAATAGCCATCCAGGTTCTTCTTATGCTGTCAGCCATGCTAAGGTTCTCGCTGCAGTCCAGGAAGCAAGAGGTGCAGAGAAGAAAGCATTTGATGCGGGAAGGGTGGAGGAAAGAGTTAACAAAGCTGTAGCTGCTGCTAATAAAGCAGCAAACGCAGCAAGAGTTGCTGCTGTGAAGGCTGTCCAGAAACAAATGGATCAAGAAACGAGCACCAACTCACCAATCTTAGTGGTCTGA 1266 46.76 MAFSKLLPEFYEGFAMTQASYLLSRFPFLMSSASFSVPFATKSLASQIFRHFRCRELLRVHLRLLILLSLPFIYFFFSNPRRSVVLKLFVVLFFSIAALIILNLAVPRLPSSIRLFLVRSSPINAFSSSAATKAVSNVRWSIGSKPKSEKWKMSGSWVRFNSNGDIYEGEFHKGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGCGVYTCQDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFGNGHRYEGAWHEGSKQGLGMYTFRNGETQSGHWQNGILNATVLENSHPGSSYAVSHAKVLAAVQEARGAEKKAFDAGRVEERVNKAVAAANKAANAARVAAVKAVQKQMDQETSTNSPILVV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4480486 4483649 + CmaCh06G008260.1 Cma06g00826 296380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00826 421 Pfam MORN repeat 167 185 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 259 281 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 236 258 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 213 235 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 305 326 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 282 304 IPR003409 -
Cma06g00826 421 Pfam MORN repeat 190 212 IPR003409 -
Cma06g00826 421 Gene3D - 197 242 - -
Cma06g00826 421 Gene3D - 149 196 - -
Cma06g00826 421 Gene3D - 243 288 - -
Cma06g00826 421 Gene3D - 289 355 - -
Cma06g00826 421 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 30 413 - -
Cma06g00826 421 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 30 413 - -
Cma06g00826 421 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 208 335 - -
Cma06g00826 421 SMART morn 234 255 IPR003409 -
Cma06g00826 421 SMART morn 188 209 IPR003409 -
Cma06g00826 421 SMART morn 303 324 IPR003409 -
Cma06g00826 421 SMART morn 165 186 IPR003409 -
Cma06g00826 421 SMART morn 211 232 IPR003409 -
Cma06g00826 421 SMART morn 280 301 IPR003409 -
Cma06g00826 421 SMART morn 257 278 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00826 - - - csv:101208169 688.337
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00826 Cma16g01097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00826 Cma-Chr6:4480486 Cma08g01007 Cma-Chr8:6323084 5.09E-164 dispersed
Cma16g01097 Cma-Chr16:8449840 Cma06g00826 Cma-Chr6:4480486 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00826 Cma_Chr06 FPKM 6.78673 8.698901 5.301876 5.383004 4.217095 3.775882 4.595469 4.607469 5.650005 5.434468