Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00827 ATGGATGATAATTTATCTTCGATCAGCGAGGAGCTTGCAGATATCGAGGGGAAAATCAATGACATCTTTCGAGCTTTGTCAAATGGGTTTCAGAAGTTGGAGAAGATCAAGGACTCAAATAGGAAGAGTAGACAATTGGAAGAATTGACAGATAAGATGCGTGATTGTAAGAGGCTTATTAAAGAGTTTGACAGAGAAGTCAAGGATTTGGAAGGCGGGAATGACTCGAACACTAATAAAATGCTGAGTGAGAAAAAGCAGTCTATGATCAAAGAATTGAACTCATATGTTGCCCTTAAAAAGCAGCATGCAAGCAATCTTGGAAACAAGCGTATCGATCTTTTTGATGGTCCTGGTGAAAGTTATGGGGAAGATAATGTGTTGCTAGCTTCAAACATGACAAATCAGCAACTGATTGATAGTGGAAACAGGATGATGGATGAGACTGATGAAGCAATTGAGAGGTCAAAAAAGGTCGTGCAAGAGACGGTAAACGTGGGAACAGAGACAGCAGCAGCACTGAAGGCACAGACGGAGCAAATGAGCAGGATAGTAAACGAGCTTGACTCCATACATTTCTCACTGAAGAAAGCCTCGAAACTGGTGAAGGAACTCGGTCGACAAATCGCGACTGATAAATGTATAATGGCCCTCCTCTTCATCATTGTCATTGGTGTCATTGCCATCATCATTGTCAAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCCGTCCAGAGTCAGAGTCGGAGACTGCTATGGAATTCCAAAGGGAAGGGATTGGCCATTCTTCATTCAAACATAAGCAAAAGGTGGGGGGACAGCTTAGCCAGGTTCCTTCATACACCTATCCAAATTCAAAATGATTACCCCTTGACTTCAAAGCTACAAATTGTATTCACTTTCACTGGGTCCTGTCCTGTCCTGAGATTTTACTGA 960 42.92 MDDNLSSISEELADIEGKINDIFRALSNGFQKLEKIKDSNRKSRQLEELTDKMRDCKRLIKEFDREVKDLEGGNDSNTNKMLSEKKQSMIKELNSYVALKKQHASNLGNKRIDLFDGPGESYGEDNVLLASNMTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASKLVKELGRQIATDKCIMALLFIIVIGVIAIIIVKLVNPNNKDIQDIPGLAPPVQSQSRRLLWNSKGKGLAILHSNISKRWGDSLARFLHTPIQIQNDYPLTSKLQIVFTFTGSCPVLRFY 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4485780 4489566 + CmaCh06G008270.1 Cma06g00827 296381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00827 319 SUPERFAMILY SNARE fusion complex 132 206 - -
Cma06g00827 319 SMART tSNARE_6 138 205 IPR000727 -
Cma06g00827 319 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 2 251 - -
Cma06g00827 319 Pfam Sec20 151 233 IPR005606 GO:0005484|GO:0006890
Cma06g00827 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 143 205 IPR000727 -
Cma06g00827 319 Gene3D - 134 213 - -
Cma06g00827 319 CDD SNARE_SNAP25N_23N_29N_SEC9N 140 204 IPR044766 GO:0005484|GO:0031201
Cma06g00827 319 PANTHER NOVEL PLANT SNARE 11 2 251 - -
Cma06g00827 319 Coils Coil 39 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00827 K08494 NSPN; novel plant SNARE - csv:101208413 464.922
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00827 Cma16g01096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00827 Cma-Chr6:4485780 Cma08g01309 Cma-Chr8:7909110 2.20E-114 dispersed
Cma16g01096 Cma-Chr16:8437627 Cma06g00827 Cma-Chr6:4485780 1.80E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g574 . . . . . . Bma07g00986 . Cmo06g00850 Cmo16g01145 . . . . Sed07g1309 Cpe14g00906 . Bhi11g00095 Tan01g2117 Cmetu06g1743 . Hepe06g1072 Mch10g1608 . Cla10g00202 Cam10g0208 Cec10g0213 Cco10g0214 Clacu10g0211 Cmu10g1054 Cre10g0462 Cone8ag0438 Cone12ag0423 . . Lsi07g01243 . . Cme06g02514 . Blo19g00158 . Bda09g00689 Bpe08g00871 . . . . . . Cma06g00827 Cma16g01096 . Car16g01038 . . . . . . . . . . . . . . . . . Csa03g00217 Chy06g02103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00827 Cma_Chr06 FPKM 11.760651 11.691621 5.804036 5.374633 13.724513 15.009505 16.241816 1.565832 2.076064 2.121935