Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00828 ATGAAGTGTTTCTTTAATCCAAAGGGGAAATCCAAATCCAAAGGAATATCCAAATCCGCTCCAGAGTTGAACCAAGGGGATAAATCCAACAATTCCGCCACCAAAAATGGTTTCGGACCGTCAAATTCATTACCATCGAGGAGTATTCCTGAATTATTCAAAGAGAAGGAGCATAATTTGAGGGTTTTCTCCCTCCAAGATCTTATTGATGCAACAAATGGCTTCAGCAGGATGCTGAAGATTGGGGAGGGTGGTTTTGGAACTGTGTACAGAGGAAGAGTTAAGCCCTCAACTACCAATGATGAACCTGTTGTGGTCGCCATTAAAAAACTCAACCAGCATAGCTTGCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAGTTTCTCAGTGTAGTTGATCATCCAAATTTAGTTAAACTTCTGGGTTATGCTGCTGAGAATGGTGAGAGAGGAATCCAGAGGCTGTTAGTCTACGAGTTCCTTCCCAATCGGAGCTTGGAGCACCATCTTTTCCAAAGAATGTCGCCGACTCTCCCATGGAAGAAAAGAGTAGAGATTAGCATTGGTGCAGCTCAGGGCTTGGCTTATCTACACGGAGGATTAGAAACACAGGTGATATATCGGGATTTTAAATCATCGAACGTGCTATTGGACGAGAACTTCAAGCCTAAACTCTCAGATTTTGGTCTTGCTAGAGAAGGACCAAGTGGTGATCACACACACGTTTCTACAGCAGTGGTTGGAACACATGGATACGCTGCTCCTGAATATGTTGAAACGGGCCGTCTCAAGAGCCAATGTGACGTATGGAGTTTCGGTGTGGTTTTGTATGAACTCCTCACAGGCAGACGAGCATTGGATAGAAACCGACCCACGGGAGAGCAGAAACTTCTTCAATGGGTGAGACAGTTTCCAGTTGACAGTAGTATGTTCACCATGCTAATCGATCCTCGACTCAGAAACCAGTATTCCTTGTCCTCCGCCCGGGAAGTTGCAAAGTTGGCAGACCGGTGCCTGAACAAGAATGCAATGAATCGGCCAACGATGACAGAAGTAGTAGAAAGCTTACAGAAAGCGCTAGTAATGTCGGAAGAGAAAACGAGCTCAAGCTCGAGCAGTAGCCAGAAACAACAATCTCATGGCGTTCTGTTATCTCCAAGATTTGTTGATCAAAAGCATGGCATGATTGGAAGACAAGGAAAGGTATGA 1209 44.83 MKCFFNPKGKSKSKGISKSAPELNQGDKSNNSATKNGFGPSNSLPSRSIPELFKEKEHNLRVFSLQDLIDATNGFSRMLKIGEGGFGTVYRGRVKPSTTNDEPVVVAIKKLNQHSLQGHKEWLAEVQFLSVVDHPNLVKLLGYAAENGERGIQRLLVYEFLPNRSLEHHLFQRMSPTLPWKKRVEISIGAAQGLAYLHGGLETQVIYRDFKSSNVLLDENFKPKLSDFGLAREGPSGDHTHVSTAVVGTHGYAAPEYVETGRLKSQCDVWSFGVVLYELLTGRRALDRNRPTGEQKLLQWVRQFPVDSSMFTMLIDPRLRNQYSLSSAREVAKLADRCLNKNAMNRPTMTEVVESLQKALVMSEEKTSSSSSSSQKQQSHGVLLSPRFVDQKHGMIGRQGKV 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4498750 4501714 + CmaCh06G008280.1 Cma06g00828 296382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00828 402 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Cma06g00828 402 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 26 376 - -
Cma06g00828 402 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00828 402 MobiDBLite consensus disorder prediction 17 48 - -
Cma06g00828 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cma06g00828 402 PANTHER OS01G0588500 PROTEIN-RELATED 26 376 - -
Cma06g00828 402 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
Cma06g00828 402 MobiDBLite consensus disorder prediction 363 384 - -
Cma06g00828 402 Pfam Protein kinase domain 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00828 402 MobiDBLite consensus disorder prediction 1 48 - -
Cma06g00828 402 CDD STKc_IRAK 81 358 - -
Cma06g00828 402 Gene3D Phosphorylase Kinase; domain 1 59 160 - -
Cma06g00828 402 SUPERFAMILY Protein kinase-like (PK-like) 58 369 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00828 - - K00924 csv:101208656 707.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01580 Cma06g00828 CCT
Cma02g01580 Cma06g00828 ECH
Cma06g00828 Cma16g01095 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00828 Cma-Chr6:4498750 Cma14g01929 Cma-Chr14:13590908 6.26E-168 dispersed
Cma16g01095 Cma-Chr16:8430207 Cma06g00828 Cma-Chr6:4498750 0 wgd
Cma19g00386 Cma-Chr19:4557806 Cma06g00828 Cma-Chr6:4498750 1.42E-172 wgd
Cma02g01580 Cma-Chr2:8978183 Cma06g00828 Cma-Chr6:4498750 1.61E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68642 PF00069 Pkinase 2.20E-48 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00828 Cma_Chr06 FPKM 6.659528 5.908721 9.382446 11.92516 9.213793 9.387869 11.193756 18.881872 19.823988 19.898466