Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00833 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTCCTCTTCCTCAACAGAAACATTCAAGATTCTGAACATGATTATTCATTACAACCTCAACCTGGTGGTGGAGGAGGAGGAGGAGGAGATGTTTTTCAACAGTCTCATCATCTGTTCAACAATGGAGGTGGGAATCATTTCAACAATTTGAGGAAAAGAGGAAGAGATGTCTCTGTTTCTCTCTCTGTTTCACCTCCCTTAATCAATCCTCTCTGTTTTCACCCTCAGATTATTGACCTTTCTCAGCTTCATAACCACTACCACCCTTCCAATGTGGTCTCCACTGGCCTCCGGTTGTCCTCCGACGACCAACAGCCGAATCTCCACTACCATCCTCCGCCGCCGGCGCGGAATGATACCAATCTCGTTTCTTTCTCTTCCTCTGTTTTCTTGTCCGATGATTTTTCCTCTCAAACCAGACAGCAACGTGATGAAATTGATCGATTCCTTCAAACTCAGGAGGAAGAGCTGCGGCGAGCGTTGGCGGAGAAACGGCAACGGCACTACAGGGAACTGCTGGGGGCGGCGGAGGAGACAGTGGCGAGGAGGTTATTGGAGAAGGAAATGGAGGTGGAGAAGGCGACGCGCCGCCATGCGGAGTTGGAAGCACGCGCTGCCAGGCTGTGTGTGGAGGCACAGGCGTGGCAGGCCAAGGCAAAGGCAGAGGAGGCGGCGGCGGCTGCGCTACAGGCACAGCTGCAGCAGGCGATAACGAGGGGCGCTGGCATTAGCAGCGGTGGAGAAGGCGGAGGCGATTGTACGGCGGCGGCGGAGGATGCCGGATCGTGTTATGTTGACCCAGAACGAGTCGGCACGGAGTTTGGACCGAGTTGTAAAGTGTGTTGGAAGCGAGTTGCGTCGGTGGTTTTGTTGCCGTGTCGGCATTTGTGCGTTTGTACGGATTGCGATCAAGTGGTTCGCACGTGCCCACTTTGTCCAGCCGTGAGGAATTCCAGTGTTGAAGTTTACCTTTCGTGA 1008 53.37 MAVQAQYPSNVLFLNRNIQDSEHDYSLQPQPGGGGGGGGDVFQQSHHLFNNGGGNHFNNLRKRGRDVSVSLSVSPPLINPLCFHPQIIDLSQLHNHYHPSNVVSTGLRLSSDDQQPNLHYHPPPPARNDTNLVSFSSSVFLSDDFSSQTRQQRDEIDRFLQTQEEELRRALAEKRQRHYRELLGAAEETVARRLLEKEMEVEKATRRHAELEARAARLCVEAQAWQAKAKAEEAAAAALQAQLQQAITRGAGISSGGEGGGDCTAAAEDAGSCYVDPERVGTEFGPSCKVCWKRVASVVLLPCRHLCVCTDCDQVVRTCPLCPAVRNSSVEVYLS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4543687 4545598 - CmaCh06G008330.1 Cma06g00833 296387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00833 335 Pfam Zinc finger, C3HC4 type (RING finger) 287 323 - -
Cma06g00833 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 334 IPR017066 -
Cma06g00833 335 Coils Coil 192 249 - -
Cma06g00833 335 MobiDBLite consensus disorder prediction 23 58 - -
Cma06g00833 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 335 IPR013083 -
Cma06g00833 335 MobiDBLite consensus disorder prediction 110 129 - -
Cma06g00833 335 ProSiteProfiles Zinc finger RING-type profile. 288 322 IPR001841 -
Cma06g00833 335 PIRSF SBP1_RNase_bind 1 335 IPR017066 -
Cma06g00833 335 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00833 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101209391 422.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01583 Cma06g00833 CCT
Cma06g00833 Cma16g01091 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00833 Cma-Chr6:4543687 Cma12g00018 Cma-Chr12:74795 5.39E-41 dispersed
Cma16g01091 Cma-Chr16:8411350 Cma06g00833 Cma-Chr6:4543687 6.33E-136 wgd
Cma19g00379 Cma-Chr19:4278156 Cma06g00833 Cma-Chr6:4543687 4.44E-87 wgd
Cma02g01583 Cma-Chr2:8988664 Cma06g00833 Cma-Chr6:4543687 1.07E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g582 . Blo03g00131 Bda06g01301 Bda08g00614 Bpe05g00542 Bpe07g00204 Bma07g00980 . Cmo06g00856 Cmo16g01141 Cma02g01583 . Car02g01346 . Sed01g4069 Cpe14g00902 Cpe05g00208 Bhi11g00101 Tan01g2125 Cmetu06g1180 Lac11g2359 Hepe06g1729 Mch10g1614 . Cla10g00197 Cam10g0203 Cec10g0208 Cco10g0208 Clacu10g0205 Cmu10g1048 Cre10g0456 Cone8ag0444 Cone12ag0605 Cone6ag0623 . Lsi07g01237 . Chy04g00042 Cme06g02508 Blo03g00823 Blo19g00261 Bda07g00844 . Bpe08g00864 Bpe11g00356 Bma05g00399 Bma12g00679 . Cmo02g01625 . Cma06g00833 Cma16g01091 . Car16g01033 . . . . . . . . . Cla09g01186 Cam09g1250 Cec09g1266 Cco09g1300 . . Cre09g1214 . Csa03g04659 Chy06g02109 Cme04g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000944 6 2 3 4 5 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 5 1 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00833 Cma_Chr06 FPKM 7.840174 7.371834 38.631531 35.885159 3.730934 4.600728 3.923471 3.846981 5.085926 5.12744