Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00835 ATGGTGGAACCGGTGGAGCTACCGAGTCGACTCGGAATTCTTCCGTTCAGGAATAAGGTTCTTTTGCCCGGCGCCATCATTCGGATTCGATGCACTTCGTCCAGCAGTGTTAAACTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGGTTGATTGGTATTCTTCCAGTGCGAGATGATGCAGACGCATCTGCAATAGGGCCTGCGTTATCTCAAGGTGTGGGAAGCGATCCTGGAGATCGTAGCTCAAGGGCTCAATCTGGATCCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTAATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTAGAGAAACCAAGTGGAAAAGTGACATATACGGTTGTGCTAGAAGGTTTATGTAGATTTTCTGTCCAGGAACTTAGCACCAGAGGAACATATTATACTGCAAAAATATCACCCTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGACCCAGATTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCTGTTCTTGAACAGAAACAAAAAACTGAAGGAAGAACAAAAGTTCTTGTGGATACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAATTATGCATGCTGGATTCGGTTGACTTAGGATCAATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAATTATCAAAATCACAGAAAGAATTTCTCTTGCGTCAGCAGATGAGGGCAATAAAGGAGGAGCTTGGTGATGATGATGATGAAGATGATTTTGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCCAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAGATGCAACCTCAACAACCTGGGTACAACAGTTTGCGTGTTTACCTTGAGCTTCTAGCTGACCTTCCTTGGAAAAAGGAAACTGAAGAACTTGAATTAGACCTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCACTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGTAAGCTTAAGCCAGATGCAAGAGGTCCCGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGGGGTCATAGGAGGACATACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAATCCAGTCATGCTATTAGATGAAATTGACAAGACAGGATCTGATGTGCGAGGAGATCCAGCTTCAGCTCTTCTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTTTCAAATATTGTATTTGTGGCCACTGCTAACAGAATGCAGCTCATACCTCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGTACCATTTGATTCCTCGAGTTTTGGAACAGCATGGGCTAAGCGCTGAATATCTTCAAATTCCAGAGGCTATGGTTAAACTTCTGATTCAAAGATACACTAGAGAGGCTGGTGTACGAAACCTCGAGAGAAATTTGGCTTCCTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGGGATCGAACTGTCCCGTTGAGTAAAGATGTGCATCAAGTTTCTTCTCCTCTGTTGGAAAATAGATTTTCTGATGGAGGTGAAGTAGATATGGAAGTCATCCCAATTGGAGCAGATCACGAGATACCAACCCCATTGAGGATAGCCTCTCCATTGGTTGTTGATGAGGCTATGCTTGAAAAAGTTCTTGGGCCTCCTCGGTTTGAGGACAGAGAAGCAGCAGAGAGAGTTATAACACCTGGGATATCCGTTGGATTGGTTTGGACTGCCTTTGGGGGTGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCAGGAAAGGGAGAATTACATCTCACTGGCCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTAAGAGCAAGGGCGACAGATCTGAAACTGGCAGCTGCTTGTGAGTCCAATCTTTTGGAGGGTCGTGATATTCATATACACTTTCCTGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTCTGGTCTCACTGTTTGGTCGGAAAAGAGTAAGAGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGATAAGATACTAGCTGCACATCGTTATGGGATAAAGAGGGTTATTCTACCAGAGAGGAATTTGAAAGATTTAGTGGAAGTTCCTCCAGGCGTGCTTGCTAGTTTGGAGATAATATTAGCCAAGCGGATGGAAGACGTACTGGAGCAGGCTTTCGAAGGTGGGTGTCCATGGAGACTACACTCGAAAAGCAAATCTTATCCCGCCCTCTATAGTGTTTTTAAGGAAGTGTATGTTGGGGCTGCACTGAAAGGGTATATTGATGTATAA 2691 44.93 MVEPVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPALSQGVGSDPGDRSSRAQSGSSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGKVTYTVVLEGLCRFSVQELSTRGTYYTAKISPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTEGRTKVLVDTVPVHKLADIFVASFEMSFEEQLCMLDSVDLGSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDFVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKETEELELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSNIVFVATANRMQLIPPPLLDRMEVIELPGYTPEEKLKIAMYHLIPRVLEQHGLSAEYLQIPEAMVKLLIQRYTREAGVRNLERNLASLARAAAVRVVERDRTVPLSKDVHQVSSPLLENRFSDGGEVDMEVIPIGADHEIPTPLRIASPLVVDEAMLEKVLGPPRFEDREAAERVITPGISVGLVWTAFGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGRKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPPGVLASLEIILAKRMEDVLEQAFEGGCPWRLHSKSKSYPALYSVFKEVYVGAALKGYIDV 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4578203 4591518 + CmaCh06G008350.1 Cma06g00835 296389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00835 896 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 764 772 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cma06g00835 896 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Cma06g00835 896 SUPERFAMILY PUA domain-like 11 241 IPR015947 -
Cma06g00835 896 MobiDBLite consensus disorder prediction 67 100 - -
Cma06g00835 896 Gene3D - 3 160 IPR046336 -
Cma06g00835 896 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 679 695 - -
Cma06g00835 896 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 814 832 - -
Cma06g00835 896 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 393 412 - -
Cma06g00835 896 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 791 810 - -
Cma06g00835 896 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 761 780 - -
Cma06g00835 896 ProSiteProfiles Lon proteolytic domain profile. 676 861 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cma06g00835 896 MobiDBLite consensus disorder prediction 77 95 - -
Cma06g00835 896 Gene3D - 529 622 - -
Cma06g00835 896 Gene3D - 240 282 - -
Cma06g00835 896 TIGRFAM lon: endopeptidase La 13 859 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cma06g00835 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 601 IPR027417 -
Cma06g00835 896 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 870 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cma06g00835 896 SMART AAA_5 385 530 IPR003593 -
Cma06g00835 896 Gene3D - 350 528 IPR027417 -
Cma06g00835 896 SUPERFAMILY Ribosomal protein S5 domain 2-like 679 858 IPR020568 -
Cma06g00835 896 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 870 - -
Cma06g00835 896 SMART lon_5 10 253 IPR003111 -
Cma06g00835 896 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 241 IPR003111 -
Cma06g00835 896 Pfam Lon protease (S16) C-terminal proteolytic domain 653 860 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cma06g00835 896 PIRSF Lon_proteas 1 627 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cma06g00835 896 PIRSF Lon_proteas 645 862 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cma06g00835 896 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 871 IPR027501 GO:0004252|GO:0006515
Cma06g00835 896 Pfam ATPase family associated with various cellular activities (AAA) 389 526 IPR003959 GO:0005524|GO:0016887
Cma06g00835 896 Gene3D - 289 337 - -
Cma06g00835 896 Gene3D - 678 863 IPR014721 -
Cma06g00835 896 CDD AAA 370 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00835 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1557.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00835 Cma16g01089 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00835 Cma-Chr6:4578203 Cma12g01032 Cma-Chr12:8195118 5.70E-154 dispersed
Cma16g01089 Cma-Chr16:8369222 Cma06g00835 Cma-Chr6:4578203 2.64E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00835 Cma_Chr06 FPKM 30.688511 33.907673 24.017216 25.025661 19.331526 19.605709 18.503906 10.631613 10.148221 9.74622