Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00838 ATGACGGCTCCACAAGACGAAAATTCTGTCCACAGGAAATGCCCTCTCGCCGAGCTCGCTCCCGTGCAAGCAGTTCTATTTGATGTCGATGGAACATTGTGTGATTCGGATCCGCTCCATTACTATGCCTTCCGTGAAATGCTTCAAGAGCATAACGATGATATTGCCCGAGCACTTTTCCCTGATGATTACGAGCGAGGTTTGAAATTTTGCGACGACAAGGAGGCTATGTTTAGGAGATTGGTTACCGAACAATTAAAGCCTGTGAATGGCTTGTACAAAGTGAAGAAATGGATAGAAGACTGCGGTTTAAAACGTGCTGCAGTTACAAACGCCCCTCGGCCGAATGCCGAGCTCATGATCTCCATGCTTGGTCTTACGGATTTCTTCGAGGCTGTTATCATAGGTGGTGAATGTGAGCATGCCAAGCCACATCCAGAACCGTATTTGAAGGCTCTTGAAGCACTCAAAGTGTCGAAGGATCACACTTTCATTTTTGAGGATTCTGTATCAGGGATCAAAGCTGGAGTGGCAGCCGAGATGCCTGTCGTCGGTATAGCGACGAGAAATCCCGAGCACTTGTTGATGCAAGCAAAGCCTGCCCTCCTCGTAAAGGACTACGACGATCCGAAATTGTGGGCAGCTTTGGATGAACTCGATAAGAGGGGAGATACCATTAACAAGGCATCATCCATGTATCGTGATGAAATGGTTTAG 717 47.42 MTAPQDENSVHRKCPLAELAPVQAVLFDVDGTLCDSDPLHYYAFREMLQEHNDDIARALFPDDYERGLKFCDDKEAMFRRLVTEQLKPVNGLYKVKKWIEDCGLKRAAVTNAPRPNAELMISMLGLTDFFEAVIIGGECEHAKPHPEPYLKALEALKVSKDHTFIFEDSVSGIKAGVAAEMPVVGIATRNPEHLLMQAKPALLVKDYDDPKLWAALDELDKRGDTINKASSMYRDEMV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4606804 4610632 - CmaCh06G008380.1 Cma06g00838 296392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00838 238 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 50 223 - -
Cma06g00838 238 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 50 - -
Cma06g00838 238 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 22 206 - -
Cma06g00838 238 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 24 186 IPR006439 -
Cma06g00838 238 Pfam Haloacid dehalogenase-like hydrolase 25 185 IPR041492 -
Cma06g00838 238 Gene3D Putative phosphatase; domain 2 37 84 IPR023198 -
Cma06g00838 238 SFLD Haloacid Dehalogenase 22 206 - -
Cma06g00838 238 Gene3D - 23 209 IPR023214 -
Cma06g00838 238 CDD HAD_BPGM-like 24 188 - -
Cma06g00838 238 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 50 223 - -
Cma06g00838 238 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 50 - -
Cma06g00838 238 SUPERFAMILY HAD-like 22 209 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00838 - - - bhj:120089975 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00971 Cma-Chr8:6066570 Cma06g00838 Cma-Chr6:4606804 5.23E-84 transposed
Cma16g01086 Cma-Chr16:8345152 Cma06g00838 Cma-Chr6:4606804 6.03E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00838 Cma_Chr06 FPKM 13.462358 14.375328 31.26413 33.063076 13.93671 13.283212 12.220186 11.84338 12.930617 12.866791