Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00839 ATGTCTGAAAAATTGAAGTCTCTCAAGGAATATCTTAAGCGCTACGAAACTAACACTGATGAGGACAAGAAGAAGAAGAAGAAAAAAAAGAGGACAGCAACAGCAACCAAACCAAATGCTTTAGGTGTTCTAGTCGTGGATGAAGATCCTGTCTGGCAGAAACAAATAGTTATTGAAGAGGATAGTGCTCATAATTCGACTGATGAGGAACCCCAAGTTGATGAAGATATTGAGGTTAAGCGAATGAGGAGACTTGAAGAGGTAAAAGCCAAGCGCCCATATAATTCCATAAGTGAAGATGGAAGTGGTTGGGTTTCACTCCCTCCAAACCCTGCAAATTCTAACGTTGTGAGCTCTGACATATCTCCACCACGTAGAACTAGAGCTCGAAATGATACACCTTCTCCATCCCACGAGTTGAAGCCTCCTGGTGAAGAAGCTGAAGATATTTCACCTCCACGGAGGAGGCAGAGGAAACATCCTAGCTCACTTGAGCATGATGAAAAGCCCACAAGCTCTACTTATCCAAGTTCTGACTCATCTCCACCACGTAAGCAGAATGTTTATAGAGGCACACACTTACAAGGAGCTGACTCAGGACATTTGGATCATGCACAAGAAGATATTGATCTATCACCTCCACGACAGCGAAGGAAGCGGTACCATACTCCATCACCTGAACCTGATGGAAAACCTACACAAACATTTTCTCCACAATCTGATATGTCACCCCCTCGTAGAGTTGATAGGCAGGCATCTAAATCAAATTTAGGGGTCAACCACAAGGCTGCGGGGTTATCTGACCTTTCTCCTCCTCGACGCAGAACTTCAAACTATGCCGAGGATGCTTATGTATCACGTGGATCGTATCTTTCACCTCCAAGGAACCATAGGGTAGATGTGAGGGGGGATCGATTACTTACAAAGAATAATTCACAAAATCATGTTACTGATGCGTCACAAGAATCACCACCAGATCTTTCTCCACAACGGAAACAGCAAAAAGTGCCGCCTGTTTCAGTCTCCTTTAAACAGCCGCGCAAGACTGGTTTGCTTACTCAGCAAGAGTTTGGGGAAGAAGTGTCTAAAACTAATAAAGAGGACTGGACGAGGTTTAAGGAGATGAATCCTTCAGCAAGTAGTAATGCGGAGCCAATCTATCGTGACAAGATTAAAGGGGATCGCATTTCAAAGGAGGAATTCTTAAAATCGAGAGGGAAAATAGAAGAAAAGCCAAAGGAGATAAAATTGGAATGGGGAAAGGGCTTGGCTCAAAAACGAGAAGCAGAAGCTGAACAAATGGAATTAGAACTTGAGAAGGATAGACCGTTTGCACGGTCAAGGAATGATGCTGAGCTCGACTCAATGTTGAGAGAGAGACTGAGATGGGGTGATCCTATGGCACATTTGGTGAAGAAAAGGCAATCCGAAATGGCTCTTCCTGATCTAGGAGACAGCGAGAAGATGAAGGAATCAGGGTTCATTATTCCTCAGGACATTCCACCGCACAGCTGGCTAAAAAGAGGATTGGATGCAGCACCTAATCGATATGGTATAAGACCAGGAAGGCATTGGGATGGAGTCGATCGTAGTAACGGATTCGAGAAGCAAATGTTCAAAAAGATGAACGAGAAACGAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA 1683 43.97 MSEKLKSLKEYLKRYETNTDEDKKKKKKKKRTATATKPNALGVLVVDEDPVWQKQIVIEEDSAHNSTDEEPQVDEDIEVKRMRRLEEVKAKRPYNSISEDGSGWVSLPPNPANSNVVSSDISPPRRTRARNDTPSPSHELKPPGEEAEDISPPRRRQRKHPSSLEHDEKPTSSTYPSSDSSPPRKQNVYRGTHLQGADSGHLDHAQEDIDLSPPRQRRKRYHTPSPEPDGKPTQTFSPQSDMSPPRRVDRQASKSNLGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSYLSPPRNHRVDVRGDRLLTKNNSQNHVTDASQESPPDLSPQRKQQKVPPVSVSFKQPRKTGLLTQQEFGEEVSKTNKEDWTRFKEMNPSASSNAEPIYRDKIKGDRISKEEFLKSRGKIEEKPKEIKLEWGKGLAQKREAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKRQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKKMNEKRATEREAYLWSVSDM 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4618361 4625818 - CmaCh06G008390.1 Cma06g00839 296393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00839 560 MobiDBLite consensus disorder prediction 14 40 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 99 124 - -
Cma06g00839 560 Pfam Pre-mRNA-splicing factor of RES complex 385 543 IPR018609 -
Cma06g00839 560 PANTHER BUD13 HOMOLOG 6 560 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 168 188 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 228 260 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 200 226 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 58 386 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 125 167 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 61 94 - -
Cma06g00839 560 MobiDBLite consensus disorder prediction 306 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00839 K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26 - csv:101222994 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00839 Cma-Chr6:4618361 Cma20g00958 Cma-Chr20:4854016 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g632 Blo02g01002 . . Bda08g00618 Bpe05g00538 . . . Cmo06g00861 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0618 Cone9ag0620 . . . . . . . . . . . . . . . Cma06g00839 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004758 1 4 2 1 1 1 2 1 1 2 1 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00839 Cma_Chr06 FPKM 9.1292 10.803756 13.51633 13.928005 10.719891 11.69337 10.36359 23.705038 23.838987 21.732166