Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00846 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCTCCCATCCCGCCGACAATCCCGACCTCCTCTTTTCCGCCTCCGACGCTCTCGACGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCCAACCGCTTCCTCTCGCCCTCTCATTCCGATCGCTTTCTTTCCCCTTCTCACTCCCTCCGTTTTTCCCCTCCTCACGAACCGCCGCTGGGGGCTAGGACTAGAACTGCTCCGCCCGAGACTGCCTTCAAGGCTATCTCTGGTGCTTCTGTAAGTGCCAACAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGCTGTTTACGACGATGCCACTGACACTGCGCTTGGGGCTTGCGGTGGTGGTTGTGGAGTCAGGGGGAGTATTTTGAATGGCTTTGAGAGCACTTCTTCTTTTACTGCTCTTCCGCTTCAGACGGTGCCCAGAGGTGGGACTGAGCCGTTGGAACGGGGTGGGTTCTTTCTATCTGGTCCAATTGAGCGTGGGGTGCTTTCTGGTCCTCTTGATGCAAATGTTGATGGCGCTGGTGCTGCTGCTGCTGGCTCTGGTGGGAGAGTTCATTTCTCCGCTCCGCTTGGTGGTATGTACATGAAGAAGAAGAGGAAGAAAAGCATTTCGGGGTTTAGGAAGGCGTTTACAAGGAATTTTTCCGATAAGCGGCCGTGGGTGGTGCCAGTGTTGAATTTCGGTGCCCGGAAGGAGAGCTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGCGATGTTCAATGGGCGCTTGGGAAGGCTGGGGAGGATCGTGTACATGTGGTTGTATCGGAGGAGCAAGGGTGGTTGTTTGTTGGGATTTATGATGGGTTTAATGGCCCTGATGCGCCGGAATTCTTGATGGGGAATCTCTATAGAGCAGTCTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGATGATTGTGAGGAGGCTGCTGCAAATGTGGTTGCTGAGAGTACAGTCAGTATGAACGCAACTAATGCTGACCCGTCTAGGAGAGCCTCCAGTCAAACCATTGAAACTAACGGGAGTGTTTCAGTAGTTGGAAATGAAGGGGAAGCGGAAGAACAGGTCCCTGATCGAGGATCAGTGAAGCGTGTTACGTTTCAATCCGTGGATGGATCGGAGCATAGGCGTAGGCGGCAGCTGTGGGAGTATTTGGCAGAGGACGATACACAGGATGGACTTGATCTTTCAGGTTCAGATAGATTTGCATTTTCAGTTGATGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAAGAGGGTCATCATCATGCTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGAGGCTGAGAATAGGGTGGAGGAGACATCTTATCGAAGTGGTAAAAGGAGAAAGGAAGGTTTAATCGATCATGAGTTGGTGTTGGGCGCATTGTCAAGGGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTCGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGTTGGTTGTGTTAATGAGGGATGAGGATGTGTATGTAATGAATGTGGGTGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCAAATCAAGACTTGAAAGAGGAGGGCGACAAAAGAGCAGGCATGGAGGGTATAATTGAGGAGTCTGCAGATACGAGTGAAGGCAAAATAACTCGAACAAACGCACCTTCGTCTCAGACAGCAAGATTAACTGCATTGCAGCTATCCACCGATCATAGCACGAGCATTGAAGAGGAAGTAAAAAGAATAAAGAATGAACACCCTGATGATAAACAATGCATTGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCAGGGTTTTTGAAACAGCCAAAGTTGAATGATGCATTATTGGAAATGTTTCGGAATGAGTATATTGGTACTGCACCATACTTATCATGCATGCCTTCTCTTCGTCACCATAGACTCTGCCCCACAGATCAATTCATCGTGCTCTCATCTGATGGATTGTATCAATATCTAACCAACGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCTGCCAGAAAAGCAGGAATGGATTTTCACGAATTGTTGGACATCCCACAGGGGGATCGGAGGAAGTATCATGACGACGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATACCTTTGA 2406 48.59 MGSGVSSLFSCLKPETRPASHPADNPDLLFSASDALDETLGHSFCYVRSSNRFLSPSHSDRFLSPSHSLRFSPPHEPPLGARTRTAPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGACGGGCGVRGSILNGFESTSSFTALPLQTVPRGGTEPLERGGFFLSGPIERGVLSGPLDANVDGAGAAAAGSGGRVHFSAPLGGMYMKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFGARKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDCEEAAANVVAESTVSMNATNADPSRRASSQTIETNGSVSVVGNEGEAEEQVPDRGSVKRVTFQSVDGSEHRRRRQLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHHHAKTLFPWKYGLGDKEKVEEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYEQQEVGPNQDLKEEGDKRAGMEGIIEESADTSEGKITRTNAPSSQTARLTALQLSTDHSTSIEEEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCMPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4703882 4708539 + CmaCh06G008460.1 Cma06g00846 296400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00846 801 SMART PP2C_4 259 787 IPR001932 -
Cma06g00846 801 PANTHER PROTEIN PHOSPHATASE 2C 21 799 IPR015655 GO:0004722|GO:0006470
Cma06g00846 801 MobiDBLite consensus disorder prediction 65 84 - -
Cma06g00846 801 Pfam Protein phosphatase 2C 514 573 IPR001932 -
Cma06g00846 801 Pfam Protein phosphatase 2C 622 754 IPR001932 -
Cma06g00846 801 CDD PP2Cc 474 789 IPR001932 -
Cma06g00846 801 ProSiteProfiles PPM-type phosphatase domain profile. 259 789 IPR001932 -
Cma06g00846 801 Gene3D - 246 796 IPR036457 -
Cma06g00846 801 SUPERFAMILY PP2C-like 271 790 IPR036457 -
Cma06g00846 801 PANTHER PROTEIN PHOSPHATASE 2C 29 21 799 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00425 Cma-Chr3:4535391 Cma06g00846 Cma-Chr6:4703882 5.73E-39 dispersed
Cma06g00846 Cma-Chr6:4703882 Cma20g00405 Cma-Chr20:1941128 9.97E-46 dispersed
Cma16g01071 Cma-Chr16:8200291 Cma06g00846 Cma-Chr6:4703882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00846 - - bhj:120092087 1404.42