Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00849 ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACCACGACGATTCATGGGAGATTAGGGCTTTTGCAGAGGACACTATGAGCACAACTTGGCCACCTAGGTCTTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGCGTACGTTTTCACCGCGAAACTCAACCCATCTCATCCTCGACGTCGTCTTTCACGATCCCCGCCACCAACGTCGTCTACGATGATGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAGTAGCGATTTCCTCCACTCAATCTCTTTACACTCCGCTACACCATATCCATCAAACAATCCGATTGCGTCGTCCATACCATCTTTAAAGTTGTCGGGAGAGGTCGGAGGAACGTCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACACAGGCCATCTCCAGCTTGA 546 49.27 MWNPNQAHRDDDHDDSWEIRAFAEDTMSTTWPPRSYNCTFCGREFRSAQALGGHMNVHRRDRVRFHRETQPISSSTSSFTIPATNVVYDDGGVCFFYQLPNESSDFLHSISLHSATPYPSNNPIASSIPSLKLSGEVGGTSSSSSHCSHMSSKGDESLISIDDGAEKLDLELRLGHRPSPA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4722305 4722850 - CmaCh06G008490.1 Cma06g00849 296403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00849 181 PANTHER OS07G0101800 PROTEIN 4 177 - -
Cma06g00849 181 SMART c2h2final6 36 58 IPR013087 -
Cma06g00849 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Cma06g00849 181 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Cma06g00849 181 PANTHER OS07G0101800 PROTEIN 4 177 - -
Cma06g00849 181 MobiDBLite consensus disorder prediction 133 155 - -
Cma06g00849 181 MobiDBLite consensus disorder prediction 133 160 - -
Cma06g00849 181 Pfam C2H2-type zinc finger 36 60 - -
Cma06g00849 181 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Cma06g00849 181 Gene3D Classic Zinc Finger 20 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00849 - - - csv:101209884 216.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01606 Cma06g00849 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00196 Cma-Chr4:939849 Cma06g00849 Cma-Chr6:4722305 7.55E-24 dispersed
Cma06g00849 Cma-Chr6:4722305 Cma19g00243 Cma-Chr19:1729402 2.54E-36 dispersed
Cma02g01606 Cma-Chr2:9146091 Cma06g00849 Cma-Chr6:4722305 1.93E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007423 2 1 1 5 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35214 PF13912 zf-C2H2_6 1.00E-07 CL0361 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00849 Cma_Chr06 FPKM 0.0 0.0 0.0 0.0 2.981741 1.835817 1.865722 0.0 0.0 0.0