Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00855 ATGATGCCTAGTGTAATGAAAGATTCATCAGAGAAGGACTCCGAGGCGTTTGTAGAAGTGAATCCAACGGGTCGATATGGGCGATACGGCGAGCTTCTCGGCTCGGGTGCGGTGAAGAAAGTATACAGAGGATTTGATCAAGAAGAAGGAATTGAGGTAGCTTGGAACCAAGTGAAACTAAGAAGCTTTTCAAATGATCCATCAATGATCGATAGGTTATACTCAGAAGTGACGTTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTACGATGTATGGCTCGACAAAGCTCATGGAACACTAAATTTCATTACCGAGGTTTGTACAAGTGGGAACCTTAGAGAGTATAGGAAGAAGCATAGGCAAGTGTCTTTGAAGGCTTTGAAGAAATGGTCCAAGCAAATTCTTAAGGGTTTGCACTATTTGCATACTCGTGAGCCTTGTGTTATTCATAGGGACCTCAATTGTAGCAATCTCTTTGTGAATGGCAATGTCGGGCAGGTGAAAATTGGCGACTTGGGCTTGGCTGCAACGGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGAACGCCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACTGAGCTTGTGGATATATATTCATTTGGAATGTGCTTGCTTGAATTGGTCACTTTGGAAATCCCTTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTGTCCTCCGGTATTAAGCCACTGGCCCTTGCCAAGGTCAAGAACCATGAGGTCAAGGCTTTCATAGATAAGTGTCTTGCTCAATCTCAAGCTCGACCCTCCGCTGCCGACCTCCTCCTCGACCCCTTCTTCAGAGAAATTAACGACGAACACGACGACGATTAG 888 43.92 MMPSVMKDSSEKDSEAFVEVNPTGRYGRYGELLGSGAVKKVYRGFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKAHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTREPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPLALAKVKNHEVKAFIDKCLAQSQARPSAADLLLDPFFREINDEHDDD 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4765519 4766815 - CmaCh06G008550.1 Cma06g00855 296409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00855 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 294 - -
Cma06g00855 295 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00855 295 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Cma06g00855 295 PIRSF TyrPK_CSF1-R 26 131 - -
Cma06g00855 295 PIRSF TyrPK_CSF1-R 121 281 - -
Cma06g00855 295 SUPERFAMILY Protein kinase-like (PK-like) 29 291 IPR011009 -
Cma06g00855 295 CDD STKc_WNK 25 285 - -
Cma06g00855 295 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 294 - -
Cma06g00855 295 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cma06g00855 295 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00216 Cma-Chr2:961119 Cma06g00855 Cma-Chr6:4765519 2.12E-163 dispersed
Cma06g00855 Cma-Chr6:4765519 Cma16g00942 Cma-Chr16:7260086 0 dispersed
Cma06g00855 Cma-Chr6:4765519 Cma20g00669 Cma-Chr20:3066602 2.84E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68643 PF00069 Pkinase 2.60E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00855 K08867 - csv:101221172 536.954