Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00870 ATGGTGGCACTTTCATCTTGTGAAGTGGAGTATATTGCGGCGACGTCAGCTGCTTATCAAGGAATATGGTTAGGACGTTTACTAAGAGAATTGATCTTGAGCCCTTCATCCTTCGTAGTAGTGATGAGGNGAGGGAGAGCGGCGGTGCGTGTGGCACCAATAACCGGGTCGGAACGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGCGGAGATTAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCCGCCATAACCCTCCGCGGCCCCAAAGCTAAAACCAATTTCCCCCTTCCCACACCCACCTCCTTTTTCGACTACCCTCCTCCTTGCCCCGATCGCCGATTCCATACTAACCCTCAGAGACCCACTCCCAGCACCCTCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGACCACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGCCGATACCCACGCACGCCGCCCGTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGATTCGTCGGAAATATCCCCTGCCGTTCGATCTTAACATTCAACCGTCTGATCATCTTGATTTTGGCGCCGATGATCTTCGACGCACCGCCTTGTGCCTCTGA 717 56.76 MVALSSCEVEYIAATSAAYQGIWLGRLLRELILSPSSFVVVMRXGRAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFHTNPQRPTPSTLSSTVESFSGPRPPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKYPLPFDLNIQPSDHLDFGADDLRRTALCL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4979860 4989029 - CmaCh06G008700.1 Cma06g00870 296424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00870 238 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Cma06g00870 238 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Cma06g00870 238 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Cma06g00870 238 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Cma06g00870 238 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
Cma06g00870 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 55 209 - -
Cma06g00870 238 MobiDBLite consensus disorder prediction 139 163 - -
Cma06g00870 238 MobiDBLite consensus disorder prediction 111 199 - -
Cma06g00870 238 CDD AP2 67 117 IPR001471 GO:0003700|GO:0006355
Cma06g00870 238 MobiDBLite consensus disorder prediction 122 136 - -
Cma06g00870 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 55 209 - -
Cma06g00870 238 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Cma06g00870 238 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00870 Cma-Chr6:4979860 Cma20g00238 Cma-Chr20:1154440 4.36E-46 dispersed
Cma16g00908 Cma-Chr16:6781618 Cma06g00870 Cma-Chr6:4979860 1.87E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35216 PF00847 AP2 2.30E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00870 K09286 - csv:101219993 221.09