Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00876 | ATGATGCAGGCGGATGAAAGCTGTGAGCTTTACAGATTCCTAGCCCAGAACAAAGGGTTCAGGGTGAGGGGCGCCTCCGGATCCTGCAGCTTTCCGGCGCCCCAAAGCTTGTCCACCTCATCCTCTTATTTCCCTTTGAATGAGTCGGCGGCGGCAGCCACCGAGACAACGCTTCCGTCGCCCCATGACAGAGCCCTGGCGGCGTTGAAGAATCACAAGGAAGCTGAGAAGCGTAGAAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCATGTAATTCCAAGACCGACAAGGCATCGCTTTTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGCATCAGACCGCAGACATTGCGGAGCTGGAAACCTTCCCTTCCGAGAGCGACGAGATCAGCGTGCTCTCCGGCGAGGAATCGGACGACGGACGGCTCCTCTTCAAGGCCTCTCTTTGCTGCGAGGACAGGTCGGACCTCATCCCGGAGCTGAACGACATCCTGAATTCGCTACAGCTGAAGACTGTGAGGGCCGACATCGTCACTGTGGGCGGCAGAATTCGCAATGTTCTTCTTATCGCCGCCAACCACCACCACAGCCTTGAGTCCCTCCACTTCCTTCAAAACGCATTGAAATCTCTTCTTGAGCGGTCCAATTGCAGCGATAGATCCAAGAGGAGGCGTCTTGTAATTGCCCACAAATGA | 714 | 54.34 | MMQADESCELYRFLAQNKGFRVRGASGSCSFPAPQSLSTSSSYFPLNESAAAATETTLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKHQTADIAELETFPSESDEISVLSGEESDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTVRADIVTVGGRIRNVLLIAANHHHSLESLHFLQNALKSLLERSNCSDRSKRRRLVIAHK | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5372952 | 5374065 | + | CmaCh06G008760.1 | Cma06g00876 | 296430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00876 | 237 | Gene3D | - | 63 | 127 | IPR036638 | GO:0046983 | |
| Cma06g00876 | 237 | SMART | finulus | 73 | 122 | IPR011598 | GO:0046983 | |
| Cma06g00876 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 5 | 233 | IPR045847 | GO:0003700|GO:0006355 | |
| Cma06g00876 | 237 | CDD | bHLH_AtAIG1_like | 63 | 138 | - | - | |
| Cma06g00876 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 71 | 125 | IPR036638 | GO:0046983 | |
| Cma06g00876 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH106-RELATED | 5 | 233 | - | - | |
| Cma06g00876 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 67 | 116 | IPR011598 | GO:0046983 | |
| Cma06g00876 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 71 | 116 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02897 | Cma-Chr4:19185849 | Cma06g00876 | Cma-Chr6:5372952 | 2.83E-36 | dispersed | |
| Cma05g00548 | Cma-Chr5:2680552 | Cma06g00876 | Cma-Chr6:5372952 | 1.34E-31 | dispersed | |
| Cma06g00876 | Cma-Chr6:5372952 | Cma18g01047 | Cma-Chr18:8715387 | 9.73E-40 | dispersed | |
| Cma06g00876 | Cma-Chr6:5372952 | Cma04g02004 | Cma-Chr4:12357179 | 1.20E-46 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35217 | PF00010 | HLH | 3.60E-12 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00876 | - | K22484 | csv:101220675 | 338.191 |