Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00887 ATGGCACTGGTCTTGCATGCAGGAAAGACGAATAAAAATGGTTTCAAGTCTCTCATTGTTGCACAGTACAATGGAGTCGAAGTGAAATTGGTCCCGGACTTTGAGATGGGCGTTTCAAACAAAACTCCGGAGTTTGTCAAGATGAACCCTCTTGGGAAGGTGCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGTAATGCGATAGCTCGCTATGTTGCACGCTTGAAGGCTGATACTACTCTGTGTGGTTCATCTGTTATTGAGTATGGGCATATTGAACAATGGATTGATTTTGCATCATTGGAGATAGATTCAAATATGGTGACTTGTTATAGGCCTAGAATGGGGAGAGCTCCTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGGTGCATTGAAGAGGGCTTTGGGAGCTTTGAATACATACCTTGCTTCAAACACTTACCTAGTTGGTCATTCTGTAACATTGGCTGACATCATCATGACTTGTAACCTGTTTATGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCAGACTTCCCACACGTTGAGAGATACTTCTGGACCTTGGTCAATCAGCCAAATATCAAAAGAATTCTGGGTGAGGTCGAGCAGGCAGAGTCAGTTCTACCTATTCAATCTACTAAGCAAACCCCCAAGGATGAGGTAAAGAAAGAACCCAAAAAGGAAGCTGCAAAAGTGAAGCCCAAGGCTGTCGTTGGCGAGGGAGATGATGAAACACCAAAGCCAAAACCCAAGAATCCTCTTGATTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGTTATACTCAAATACCAAAACCAACTTCCGGGAGATCGCAATTAAAGGATTTTGGGAGATGTATGATCCAGAGGGGTATTCTCTTTGGTTCTGTGATTACAAGTACAACGACGAGAATACTGTTTCGTTCGTAACGTTGAACAAGGTTGGCGGATTTCTCCAGCGAATGGATCTTGCTCGGAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCGGAGGCTCCATTTAAAGTGAAGGGGCTGTGGGTTTTCCGTGGACAAGAGATCCCACAATTTGTGGTGGATGAGTGCTACGACATGGAGCTTTATGAATGGAGAAAGGTTGACATATCAGATGAGGCGCAGAAGGAACGAGTCAACCAGATGATTGAAGATAAGGAGCCTTTTGAAGGAGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA 1248 44.31 MALVLHAGKTNKNGFKSLIVAQYNGVEVKLVPDFEMGVSNKTPEFVKMNPLGKVPVLETPDGPIFESNAIARYVARLKADTTLCGSSVIEYGHIEQWIDFASLEIDSNMVTCYRPRMGRAPYLPPVEEAAIGALKRALGALNTYLASNTYLVGHSVTLADIIMTCNLFMGFTKLMTKSFTSDFPHVERYFWTLVNQPNIKRILGEVEQAESVLPIQSTKQTPKDEVKKEPKKEAAKVKPKAVVGEGDDETPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWEMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWVFRGQEIPQFVVDECYDMELYEWRKVDISDEAQKERVNQMIEDKEPFEGEALLDAKCFK 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5603706 5606718 - CmaCh06G008870.1 Cma06g00887 296441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00887 415 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cma06g00887 415 MobiDBLite consensus disorder prediction 214 260 - -
Cma06g00887 415 Gene3D - 80 217 - -
Cma06g00887 415 SFLD Glutathione Transferase (cytosolic) 4 190 IPR040079 -
Cma06g00887 415 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Cma06g00887 415 SUPERFAMILY eEF1-gamma domain 255 415 IPR036433 GO:0003746|GO:0006414
Cma06g00887 415 SUPERFAMILY GST C-terminal domain-like 73 212 IPR036282 -
Cma06g00887 415 CDD GST_C_EF1Bgamma_like 90 210 - -
Cma06g00887 415 SFLD Main (cytGST) 4 190 - -
Cma06g00887 415 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 255 415 IPR036433 GO:0003746|GO:0006414
Cma06g00887 415 PANTHER - 1 415 - -
Cma06g00887 415 Gene3D Glutaredoxin 1 74 - -
Cma06g00887 415 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 255 415 IPR001662 GO:0003746|GO:0006414
Cma06g00887 415 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 415 IPR044628 GO:0004364
Cma06g00887 415 Pfam Glutathione S-transferase, N-terminal domain 11 76 IPR004045 -
Cma06g00887 415 Pfam Elongation factor 1 gamma, conserved domain 254 362 IPR001662 GO:0003746|GO:0006414
Cma06g00887 415 SUPERFAMILY Thioredoxin-like 2 83 IPR036249 -
Cma06g00887 415 MobiDBLite consensus disorder prediction 221 255 - -
Cma06g00887 415 SMART EF1G_2 254 362 IPR001662 GO:0003746|GO:0006414
Cma06g00887 415 CDD GST_N_EF1Bgamma 3 77 - -
Cma06g00887 415 Pfam Glutathione S-transferase, C-terminal domain 128 197 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01937 Cma-Chr4:10560539 Cma06g00887 Cma-Chr6:5603706 0 dispersed
Cma06g00887 Cma-Chr6:5603706 Cma08g00410 Cma-Chr8:2346863 4.81E-10 dispersed
Cma06g00887 Cma-Chr6:5603706 Cma16g00767 Cma-Chr16:4206363 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00887 K03233 - zju:107412556 686.026