Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00891 | ATGGGCTGTATTTGCTCTAAAGGAAATCCATCTGACGACTATGTTGCTGAGAATCATTCCAAAGAAAGACATTTGAAGTCTAATAGATCTTCCAGGCATCTAGGGGCTTCATTGAGGAAAGAAGAGCCGGTGTTGCATGCTGATGGAGGGCCAAGTGATGCAATGGCGCGATTGATAACGAACCATCACGGTGAAGAAAATGCTGGATCAACATCTGAATCGGATGATGTTGAGAAGGCAGCACCCATTGAAAAAGCTGCCACTACCAAGTCACTGCGTCAAGAACGACCAACTATGGAGGATGGAGGAAAGAGAGTAGGAGTACATAATAGTAATGCAACACCTAGTATAACCAATGTTGTTAATGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGGCATCTGTGGCTGGAGAAGCAATCAATGGGTGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAATTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGCGATATTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTTATGAAGCTTGAAGGTCTTATTACTTCAAGGGTTTCTGGCAGTTTATACCTAATATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGTGGACTTAAACATTGCCATGTCCAGGGAATTTTGCACCGTGACATCAAGGGATCAAATCTTCTGATTGATAATAATGGTAATCTAAAGATAGGTGATTTTGGTCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGCGTGGTAACGTTGTGGTATCGACCGCCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTACTGGTTGCATTCTTGCAGAACTGTATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGATGTTTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTACTTCTTGCGGTTGAACCCGATGGTCGTGGAACAGCTTCCTCTGCCCTTCAAAGCGAGTTCTTTACTACAAAACCGCTTCCATCGGAGCCCTCTACTTTACCAAAGTACCCACCAAGCAAGGAGTTTGATGTTAAGCTTCGTGATGAGGAAAACCGAAGAAGAAGAGCTCCTATCAGTACAGCACGTGAACATGAAGCAGCTCGAAAGTTTCCGAAAGAACCTAAAGCTATTCCTGCACCAGATGCAAATGCTGAATTGCAGACATCCATGCAGAAGAAACTAAGGCAGCAGAATCCTTCAAGTGTCAGTGAAAAGTATAATCCTGAAGAGGACGGAGGTTCTGGCTTTTGCATTGATCCCCCTAAAGAATCAACACAAACTCAACCTAATGCTTCGAGTTCTTCACGAAACATGAACAGGAGTCGGGGTGATACTCCAGGAGGTTTTTCAATCGGGGAAAAGGGCGCAGAACTTAGAAAACAAAGATCTTATATGCACCATGGTTCTGGACAGTTATCCCGGTATTCCAATTCCGTTGCAGGTCAAGGCGGTTTGCAATTCGGCTGTGGTGGAGAAAGTAGTAGTAATTCACGTTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGCGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGAAAGTCCGAAGTCTTCTTATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTGCTATGAATTACGCCTCGAAAAAGAGAATTCATTATTCAGGACCCTTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCATGAGAAACAAATCCAGCATGCAGTTCGTAAGGCTCGTATAGACAAAGCGAAGACAAGAAAGACATACGATGACAAAAGTCTATCGGAGTCGTTGCTTCACCATATGAGAAACGGCAATTGA | 2202 | 44.05 | MGCICSKGNPSDDYVAENHSKERHLKSNRSSRHLGASLRKEEPVLHADGGPSDAMARLITNHHGEENAGSTSESDDVEKAAPIEKAATTKSLRQERPTMEDGGKRVGVHNSNATPSITNVVNGEKGALVIAGWPSWLASVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLKHCHVQGILHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCFAETFKDFPSSALALLDVLLAVEPDGRGTASSALQSEFFTTKPLPSEPSTLPKYPPSKEFDVKLRDEENRRRRAPISTAREHEAARKFPKEPKAIPAPDANAELQTSMQKKLRQQNPSSVSEKYNPEEDGGSGFCIDPPKESTQTQPNASSSSRNMNRSRGDTPGGFSIGEKGAELRKQRSYMHHGSGQLSRYSNSVAGQGGLQFGCGGESSSNSRWPEECFNVSYNHFNGGESSEKHEWSHHLLESPKSSYKIDDQSSGKESAMNYASKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTRKTYDDKSLSESLLHHMRNGN | 733 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5663101 | 5673128 | - | CmaCh06G008910.1 | Cma06g00891 | 296445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00891 | 733 | ProSiteProfiles | Protein kinase domain profile. | 156 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g00891 | 733 | Pfam | Protein kinase domain | 156 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g00891 | 733 | Coils | Coil | 684 | 704 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 440 | 571 | - | - | |
Cma06g00891 | 733 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672|GO:0006468 | |
Cma06g00891 | 733 | PANTHER | CELL DIVISION PROTEIN KINASE | 103 | 709 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 539 | 563 | - | - | |
Cma06g00891 | 733 | CDD | STKc_CDK9_like | 156 | 440 | - | - | |
Cma06g00891 | 733 | SMART | serkin_6 | 156 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 703 | 733 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
Cma06g00891 | 733 | SUPERFAMILY | Protein kinase-like (PK-like) | 150 | 446 | IPR011009 | - | |
Cma06g00891 | 733 | Gene3D | Transferase(Phosphotransferase) domain 1 | 239 | 481 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 703 | 725 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 68 | 103 | - | - | |
Cma06g00891 | 733 | PANTHER | KINASE CDK9, PUTATIVE-RELATED | 103 | 709 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 459 | 494 | - | - | |
Cma06g00891 | 733 | MobiDBLite | consensus disorder prediction | 503 | 526 | - | - | |
Cma06g00891 | 733 | ProSitePatterns | Protein kinases ATP-binding region signature. | 162 | 185 | IPR017441 | GO:0005524 | |
Cma06g00891 | 733 | Gene3D | Phosphorylase Kinase; domain 1 | 143 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01938 | Cma-Chr4:10569305 | Cma06g00891 | Cma-Chr6:5663101 | 2.53E-80 | dispersed | |
Cma06g00891 | Cma-Chr6:5663101 | Cma16g00396 | Cma-Chr16:1972196 | 0 | dispersed | |
Cma06g00890 | Cma-Chr6:5659558 | Cma06g00891 | Cma-Chr6:5663101 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68645 | PF00069 | Pkinase | 3.60E-68 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00891 | - | - | csv:101214435 | 1256.12 |