Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00891 ATGGGCTGTATTTGCTCTAAAGGAAATCCATCTGACGACTATGTTGCTGAGAATCATTCCAAAGAAAGACATTTGAAGTCTAATAGATCTTCCAGGCATCTAGGGGCTTCATTGAGGAAAGAAGAGCCGGTGTTGCATGCTGATGGAGGGCCAAGTGATGCAATGGCGCGATTGATAACGAACCATCACGGTGAAGAAAATGCTGGATCAACATCTGAATCGGATGATGTTGAGAAGGCAGCACCCATTGAAAAAGCTGCCACTACCAAGTCACTGCGTCAAGAACGACCAACTATGGAGGATGGAGGAAAGAGAGTAGGAGTACATAATAGTAATGCAACACCTAGTATAACCAATGTTGTTAATGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGGCATCTGTGGCTGGAGAAGCAATCAATGGGTGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAATTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGCGATATTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTTATGAAGCTTGAAGGTCTTATTACTTCAAGGGTTTCTGGCAGTTTATACCTAATATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGTGGACTTAAACATTGCCATGTCCAGGGAATTTTGCACCGTGACATCAAGGGATCAAATCTTCTGATTGATAATAATGGTAATCTAAAGATAGGTGATTTTGGTCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGCGTGGTAACGTTGTGGTATCGACCGCCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTACTGGTTGCATTCTTGCAGAACTGTATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGATGTTTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTGGATGTACTTCTTGCGGTTGAACCCGATGGTCGTGGAACAGCTTCCTCTGCCCTTCAAAGCGAGTTCTTTACTACAAAACCGCTTCCATCGGAGCCCTCTACTTTACCAAAGTACCCACCAAGCAAGGAGTTTGATGTTAAGCTTCGTGATGAGGAAAACCGAAGAAGAAGAGCTCCTATCAGTACAGCACGTGAACATGAAGCAGCTCGAAAGTTTCCGAAAGAACCTAAAGCTATTCCTGCACCAGATGCAAATGCTGAATTGCAGACATCCATGCAGAAGAAACTAAGGCAGCAGAATCCTTCAAGTGTCAGTGAAAAGTATAATCCTGAAGAGGACGGAGGTTCTGGCTTTTGCATTGATCCCCCTAAAGAATCAACACAAACTCAACCTAATGCTTCGAGTTCTTCACGAAACATGAACAGGAGTCGGGGTGATACTCCAGGAGGTTTTTCAATCGGGGAAAAGGGCGCAGAACTTAGAAAACAAAGATCTTATATGCACCATGGTTCTGGACAGTTATCCCGGTATTCCAATTCCGTTGCAGGTCAAGGCGGTTTGCAATTCGGCTGTGGTGGAGAAAGTAGTAGTAATTCACGTTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGCGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGAAAGTCCGAAGTCTTCTTATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTGCTATGAATTACGCCTCGAAAAAGAGAATTCATTATTCAGGACCCTTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCATGAGAAACAAATCCAGCATGCAGTTCGTAAGGCTCGTATAGACAAAGCGAAGACAAGAAAGACATACGATGACAAAAGTCTATCGGAGTCGTTGCTTCACCATATGAGAAACGGCAATTGA 2202 44.05 MGCICSKGNPSDDYVAENHSKERHLKSNRSSRHLGASLRKEEPVLHADGGPSDAMARLITNHHGEENAGSTSESDDVEKAAPIEKAATTKSLRQERPTMEDGGKRVGVHNSNATPSITNVVNGEKGALVIAGWPSWLASVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLKHCHVQGILHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCFAETFKDFPSSALALLDVLLAVEPDGRGTASSALQSEFFTTKPLPSEPSTLPKYPPSKEFDVKLRDEENRRRRAPISTAREHEAARKFPKEPKAIPAPDANAELQTSMQKKLRQQNPSSVSEKYNPEEDGGSGFCIDPPKESTQTQPNASSSSRNMNRSRGDTPGGFSIGEKGAELRKQRSYMHHGSGQLSRYSNSVAGQGGLQFGCGGESSSNSRWPEECFNVSYNHFNGGESSEKHEWSHHLLESPKSSYKIDDQSSGKESAMNYASKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTRKTYDDKSLSESLLHHMRNGN 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5663101 5673128 - CmaCh06G008910.1 Cma06g00891 296445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00891 733 ProSiteProfiles Protein kinase domain profile. 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00891 733 Pfam Protein kinase domain 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00891 733 Coils Coil 684 704 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 440 571 - -
Cma06g00891 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cma06g00891 733 PANTHER CELL DIVISION PROTEIN KINASE 103 709 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 539 563 - -
Cma06g00891 733 CDD STKc_CDK9_like 156 440 - -
Cma06g00891 733 SMART serkin_6 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00891 733 MobiDBLite consensus disorder prediction 703 733 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 1 111 - -
Cma06g00891 733 SUPERFAMILY Protein kinase-like (PK-like) 150 446 IPR011009 -
Cma06g00891 733 Gene3D Transferase(Phosphotransferase) domain 1 239 481 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 703 725 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 68 103 - -
Cma06g00891 733 PANTHER KINASE CDK9, PUTATIVE-RELATED 103 709 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 459 494 - -
Cma06g00891 733 MobiDBLite consensus disorder prediction 503 526 - -
Cma06g00891 733 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Cma06g00891 733 Gene3D Phosphorylase Kinase; domain 1 143 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01938 Cma-Chr4:10569305 Cma06g00891 Cma-Chr6:5663101 2.53E-80 dispersed
Cma06g00891 Cma-Chr6:5663101 Cma16g00396 Cma-Chr16:1972196 0 dispersed
Cma06g00890 Cma-Chr6:5659558 Cma06g00891 Cma-Chr6:5663101 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68645 PF00069 Pkinase 3.60E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00891 - - csv:101214435 1256.12