Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00898 ATGGCTTCCTCGTCGTCTGATCCTGCCTTCAAACACGAACCCGGTGCTTCTTGCGCTGCTGCTGCTGGAGGAGGAACGCCGGAGTCTTCCGAGGTTGTATTGGCGAACGATCAGCTTTTACTGTACAGAGGGTTGAAGAAACCCAAGAAAGAACGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGGAAAAGGAGTTCCATATACCGCGGAGTCACTAGACATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACCTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATATTGGGGTCCTGGAACTCTTATTAATTTTCCATTGACTGATTATACTCGGGACCTTGAAGAAATGCAGACTGTTTCAAGAGAGGAATATCTTGCGTCTTTAAGAAGAAAGAGCAGTGGATTCGCCCGGGGAATATCTAAATATCGTGGTCTCTCGAGTCTGTTCGGTCGTATGTCAGGCCCTGATTGTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACAGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCCAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTTGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGCCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACACTGTGAGCAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAATGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATCGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCGCCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCAATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAATCTCTTCAACTTACACTTTGTTTAGGCCGGAGGAATAA 1284 45.33 MASSSSDPAFKHEPGASCAAAAGGGTPESSEVVLANDQLLLYRGLKKPKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPLTDYTRDLEEMQTVSREEYLASLRRKSSGFARGISKYRGLSSLFGRMSGPDCVNSIIYGAGDDQATVSEFIHNFCIERKIDLTSYIKWWGPNKNRTSSVGSKLSEEDKHSSVGEVDSELKALGQTTCPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQQKALKLEEINNENDENENKNTVSKIDHGKAVETHASHGGDPNEKYGVAFGASGGSPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTEISSTYTLFRPEE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5727459 5732483 - CmaCh06G008980.1 Cma06g00898 296452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00898 427 SMART rav1_2 74 146 IPR001471 GO:0003700|GO:0006355
Cma06g00898 427 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Cma06g00898 427 Coils Coil 302 325 - -
Cma06g00898 427 Pfam AP2 domain 74 132 IPR001471 GO:0003700|GO:0006355
Cma06g00898 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 425 - -
Cma06g00898 427 PANTHER BNAA03G19580D PROTEIN 19 425 - -
Cma06g00898 427 MobiDBLite consensus disorder prediction 240 255 - -
Cma06g00898 427 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700|GO:0006355
Cma06g00898 427 MobiDBLite consensus disorder prediction 235 255 - -
Cma06g00898 427 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Cma06g00898 427 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Cma06g00898 427 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700|GO:0006355
Cma06g00898 427 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00898 Cma-Chr6:5727459 Cma04g01459 Cma-Chr4:7419665 9.72E-59 dispersed
Cma14g00543 Cma-Chr14:2693741 Cma06g00898 Cma-Chr6:5727459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35219 PF00847 AP2 3.40E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00898 K09285 - csv:101206434 707.212