Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00898 | ATGGCTTCCTCGTCGTCTGATCCTGCCTTCAAACACGAACCCGGTGCTTCTTGCGCTGCTGCTGCTGGAGGAGGAACGCCGGAGTCTTCCGAGGTTGTATTGGCGAACGATCAGCTTTTACTGTACAGAGGGTTGAAGAAACCCAAGAAAGAACGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGGAAAAGGAGTTCCATATACCGCGGAGTCACTAGACATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACCTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATATTGGGGTCCTGGAACTCTTATTAATTTTCCATTGACTGATTATACTCGGGACCTTGAAGAAATGCAGACTGTTTCAAGAGAGGAATATCTTGCGTCTTTAAGAAGAAAGAGCAGTGGATTCGCCCGGGGAATATCTAAATATCGTGGTCTCTCGAGTCTGTTCGGTCGTATGTCAGGCCCTGATTGTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACAGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCCAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTTGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGCCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACACTGTGAGCAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAATGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATCGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCGCCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCAATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAATCTCTTCAACTTACACTTTGTTTAGGCCGGAGGAATAA | 1284 | 45.33 | MASSSSDPAFKHEPGASCAAAAGGGTPESSEVVLANDQLLLYRGLKKPKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPLTDYTRDLEEMQTVSREEYLASLRRKSSGFARGISKYRGLSSLFGRMSGPDCVNSIIYGAGDDQATVSEFIHNFCIERKIDLTSYIKWWGPNKNRTSSVGSKLSEEDKHSSVGEVDSELKALGQTTCPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQQKALKLEEINNENDENENKNTVSKIDHGKAVETHASHGGDPNEKYGVAFGASGGSPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTEISSTYTLFRPEE | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5727459 | 5732483 | - | CmaCh06G008980.1 | Cma06g00898 | 296452 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00898 | 427 | SMART | rav1_2 | 74 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | SUPERFAMILY | DNA-binding domain | 73 | 141 | IPR016177 | GO:0003677 | |
Cma06g00898 | 427 | Coils | Coil | 302 | 325 | - | - | |
Cma06g00898 | 427 | Pfam | AP2 domain | 74 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 19 | 425 | - | - | |
Cma06g00898 | 427 | PANTHER | BNAA03G19580D PROTEIN | 19 | 425 | - | - | |
Cma06g00898 | 427 | MobiDBLite | consensus disorder prediction | 240 | 255 | - | - | |
Cma06g00898 | 427 | Gene3D | AP2/ERF domain | 74 | 142 | IPR036955 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | MobiDBLite | consensus disorder prediction | 235 | 255 | - | - | |
Cma06g00898 | 427 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | PRINTS | Ethylene responsive element binding protein signature | 122 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00898 | 427 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00898 | Cma-Chr6:5727459 | Cma04g01459 | Cma-Chr4:7419665 | 9.72E-59 | dispersed | |
Cma14g00543 | Cma-Chr14:2693741 | Cma06g00898 | Cma-Chr6:5727459 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35219 | PF00847 | AP2 | 3.40E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00898 | K09285 | - | csv:101206434 | 707.212 |