Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00904 ATGGGTTTCTTAGTTTCTCTCTTCAAACAGAAGGGTTTTGTTATTTTCTTGAATCTCTCGTTTCTCTCACTGGCTTGTGCTTTTTTAGCGATTCGATTTCACTCTCCAGAAGAAACCCAATTCCGTGTTCTTAACAACAGCTTCAGAAAACTCCATGGCACTGCTCAGGAAGATTGCCGGAATTTTATTGGTCTACCTGACTTTGAAGCTAAGTGCTCTGTTCTTAAATTCAACAACCCTTGTAACACCCAAGGCTATATAGATTATCTTTATGTTTTCTATTGTCAGTACGGAAGTTTTAGCATTCTGGGCTATACTCTGTTGTTTCTGTGGCTTCTTGTGTTGTTCTATCTTTTGGGTAACACTGCTTCTGAATACTTTTGCTCTTCCCTTGAGAGTTTGTCGAAATTGTTGAATCTATCACCAACAATTGCTGGTGTTACTCTGCTTTCTTTGGGTAATGGCGCACCTGATGTTTTTTCCAGCCTTGTTGCTTTCATGGGAGATGGAACTACTGATATTGGCTTGAATACTGTTCTTGGTGGAGCCTCATTTGTTACCTGCGTCGTTGTCGGAATCATAAGCATTTTGCTGCGTTTTCGACGGATTAAGGTTAATAGGTATGCCTTCATTAGAGATGTTTTGTTCCTCCTCTTGGTTCTTTTGTCTGTTTTTTTGATATTGCTTCATGGACATATCAATCTGTGGGGTTCCCTTGCCTTTTCTTCCATGTATCTTGTTTATGTTTTGGTTGTTTATGTCTCCCATGCCCAATGGCTGAGTTTGAGAAGGGATATTTTCCAACCCCTTTTGAAAGAGCCACCAAAGGATGATGTTAGAATCGACGTATACGATGTCTGTTTTTGTCCTAGTTTTTCGCCTTGTTGTGTTCTTTTCCTTCGCCTTCTTGAGATTCCTCTTTACTTGCCTAGAAGGCTGACAATTCCCACCATTGCTGAAGAAAACTGGTGTAGACTGTATGCAGTTGCTTCAGTGACATTAGCTCCCATTCTCTTAGCTTTTCTATGGGCATTTCACCACCAGAGCGATACGTCTTGGTCGAACGTAATCGTCTGCATCATCGCCTTGCTGGTCGGAGTTAGTTGTGGAATTGTTGCATTTGTGACAACTGAGAATTCAAGCCCACCAAAGAAGTGGCTGTTCCCATGGCTTGCAGCTGGGTTCACCATGAGTTTAACATGGAGTTATATTGTTGCTCAGGAACTGTTAGGCCTATTGGTTTCACTTGGCTACATAATGGGCATAAGCCCTTCAATTCTAGGACTGACCTTCCTGGCTTGGGGAAACTCTCTTGGGGATTTAGTTTCCAATGTGACCATGGCCTTGAACGGCGGGCAGCGAGGCGCCCAAATAGCCATCTCCGGCTGCTACGCCGGCCCCATCTTCAGCACGCTGTTTGGCCTTGGGATGTCCCTTGTTAGCGCTTCATGGAAGAAGTATCCTGAGCCGGTGGCCATCCCGGCTGACCCTTACGTGATGGAGACATTGGGGCTATTGGTAGGAGGGCTGCTATGGGCGCTTTTAAGTTTGCCAGGGAGAGAGATGAGGGTTGATGCAGTGTTGGGAGGAGGCCTTATGGCTATCTATTTGACCTCTTTGCTCTTAAGAGTGTTGCAAGCTCTTGGGTCTTCCCATTAG 1659 44.54 MGFLVSLFKQKGFVIFLNLSFLSLACAFLAIRFHSPEETQFRVLNNSFRKLHGTAQEDCRNFIGLPDFEAKCSVLKFNNPCNTQGYIDYLYVFYCQYGSFSILGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKLLNLSPTIAGVTLLSLGNGAPDVFSSLVAFMGDGTTDIGLNTVLGGASFVTCVVVGIISILLRFRRIKVNRYAFIRDVLFLLLVLLSVFLILLHGHINLWGSLAFSSMYLVYVLVVYVSHAQWLSLRRDIFQPLLKEPPKDDVRIDVYDVCFCPSFSPCCVLFLRLLEIPLYLPRRLTIPTIAEENWCRLYAVASVTLAPILLAFLWAFHHQSDTSWSNVIVCIIALLVGVSCGIVAFVTTENSSPPKKWLFPWLAAGFTMSLTWSYIVAQELLGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVSNVTMALNGGQRGAQIAISGCYAGPIFSTLFGLGMSLVSASWKKYPEPVAIPADPYVMETLGLLVGGLLWALLSLPGREMRVDAVLGGGLMAIYLTSLLLRVLQALGSSH 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5825641 5827542 - CmaCh06G009040.1 Cma06g00904 296458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00904 552 Pfam Sodium/calcium exchanger protein 109 253 IPR004837 GO:0016021|GO:0055085
Cma06g00904 552 Pfam Sodium/calcium exchanger protein 391 538 IPR004837 GO:0016021|GO:0055085
Cma06g00904 552 Gene3D - 140 265 IPR044880 -
Cma06g00904 552 Gene3D - 326 544 IPR044880 -
Cma06g00904 552 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 8 550 - -
Cma06g00904 552 PANTHER CATION/CALCIUM EXCHANGER 2 8 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00904 Cma-Chr6:5825641 Cma11g00740 Cma-Chr11:3607174 4.62E-50 dispersed
Cma14g00536 Cma-Chr14:2658867 Cma06g00904 Cma-Chr6:5825641 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00904 K13754 - csv:101204766 851.662