Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00911 ATGGAAAGGCTCCAAGGACCCATTAATCCTTCTTTTTATGGTGGCTGTTCTGACATGGGTTGCTCCAAACAACAATTCTCCAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAAAACTTGCTGAAGCTGCAGCAGCACCTAAGCAATGACAAACCGTGGAAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTGCAGAGTGTAACCAAAATGGAGGGTTATGCAGGACCCAAATGGAAAATTCTCCTCCACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCAGTCGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACCTCCTACATACAAAGGGGTGATCAGGCGTCTATAATTGGGGGCGCAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGGAAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCACGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTGTGCAGAGGTGAAGTCAGAGGTGGGTGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCGAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCATCTAAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAACGATGGCAGTCAAGTCAATGAGTTTTATGGTGGCTGTTCTGACATGGGTTGCTCCAAACAACAATTCTCCAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAAAACTTGCTGAAGCTGCAGCAGCACCTAAGCAATGACAAACCGTGGAAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTGCAGAGTGCAACCAGAATGGAGGGTTATGCAGGACCCAAATGGAAAATTCTTCTCCACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCAGTCGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACCTCCTACATACAAAGGGGTGATCAGGCGTCTATAATTGGGGGCGCAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGGAAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCACGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTGTGCAGAGGTGAAGTCAGAGGTGGGTGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCGAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCATCTAAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAACGATGGCAAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGA 1962 46.69 MERLQGPINPSFYGGCSDMGCSKQQFSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWKQEVNSASCRVSAECNQNGGLCRTQMENSPPPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGAIDFVKELEQLLECLEAQRKERKGEGDEEGSPTSSTATGMASNGRIGEGVCAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLKIEDECKLGSAVQIAGAVHEILSFINDGSQVNEFYGGCSDMGCSKQQFSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWKQEVNSASCRVSAECNQNGGLCRTQMENSSPPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGAIDFVKELEQLLECLEAQRKERKGEGDEEGSPTSSTATGMASNGRIGEGVCAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLKIEDECKLGSAVQIAGAVHEILSFINDGKAGISGADCRSSS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5984115 5989259 - CmaCh06G009110.1 Cma06g00911 296465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00911 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Cma06g00911 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 515 IPR036638 GO:0046983
Cma06g00911 653 Coils Coil 500 520 - -
Cma06g00911 653 PANTHER MAX DIMERIZATION, MAD 84 322 - -
Cma06g00911 653 SMART finulus 458 509 IPR011598 GO:0046983
Cma06g00911 653 SMART finulus 141 192 IPR011598 GO:0046983
Cma06g00911 653 Gene3D - 443 519 IPR036638 GO:0046983
Cma06g00911 653 Gene3D - 126 202 IPR036638 GO:0046983
Cma06g00911 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 503 IPR011598 GO:0046983
Cma06g00911 653 Coils Coil 183 203 - -
Cma06g00911 653 MobiDBLite consensus disorder prediction 104 138 - -
Cma06g00911 653 MobiDBLite consensus disorder prediction 514 538 - -
Cma06g00911 653 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Cma06g00911 653 Pfam Helix-loop-helix DNA-binding domain 453 504 IPR011598 GO:0046983
Cma06g00911 653 MobiDBLite consensus disorder prediction 421 455 - -
Cma06g00911 653 PANTHER MAX DIMERIZATION, MAD 397 639 - -
Cma06g00911 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Cma06g00911 653 MobiDBLite consensus disorder prediction 197 221 - -
Cma06g00911 653 PANTHER TRANSCRIPTION FACTOR BHLH70 397 639 - -
Cma06g00911 653 PANTHER TRANSCRIPTION FACTOR BHLH70 84 322 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00911 Cma14g02163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00911 Cma-Chr6:5984115 Cma14g02163 Cma-Chr14:14838337 5.63E-126 dispersed
Cma06g00911 Cma-Chr6:5984115 Cma05g00515 Cma-Chr5:2458214 7.94E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35225 PF00010 HLH 4.10E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00911 - - cmos:111464923 571.237