Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00914 ATGGAAGAAGATTTTTCAAAACAAAAGCTAGAACTCGACGATTACAATGATAACGGAGATTTCAAGTCATCCTGGTGGAAAAGAAAACTAACACTACTGAATCTCGATTCATCAACTAGAAATGGCGAGAGATCGAGAGATGCAGGGAAGAACAATAGCGCAAACTTCAGATCTCTAAGTCAAATTGTCATTCATCCTCATAACTGGCGATACGTTCTTTGGACGCATTTCATTTTGGTATGGGCTGTGTACTCTTCCTTCTTTACGCCACTGGAATTCGGATTCTTCAGGGGTCTCCCCAAGAATCTCTTCCTCCTCGACGTTGCCGGCCAGATCGCCTTTCTCATCGATATCGCTGTTCACTTTTGTGTTGCCTATCGCGATTCGCATTCTTACCGCTTTGTCTACGACCGTAATCTCATCGCTATCAGATATTTGAAGTCTCGATTTGTGGTTGACTTAATGGGTTGTATGCCCTGGGACGCTATCTACAAGGCTTCTGGTAAGAAGGAGCTTGTGAGATATTTACTATGGATTCGGCTAAGTCGAGCCTTAAGAGTTACTGAATTCTTTGAGAAATTGGAGAAGGATATACGAATAAATTACCTCGGTACAAGAATTGCGAAGCTTTTTGTTGTGGAGCTTTATTGTACTCATACAGCTGCCTGTATTTTCTACTATCTTGCTACTACTCTACCTCCGTCAAAAGAAGGGTACACCTGGATAGGAAGCCTAAAGTTGGGGGACTATAGCTATTCAAACTTTAGAGAAATTGATCTTTGGAAGCGTTACATCACATCATTATATTTTGCTGTTGTAACTATGGCAACTGTTGGTTATGGTGACATACATGCAGTCAATGTCAGGGAAATGATTTTTATCATGATTTTTGTCTCCTTTGATATGATTCTTGGTTCTTATTTGCTTGGTAACATGGCAGCATTGATAGTAAAAGGATCAAAAACAGAAAAGTTTAGAGATAAAATGAAGGATGTTATTAAATACGTGAATAAAAATAAGCTCAATAGGAAATTAAGTAAAGACATCAAAGATCATCTTCAATTACAGTACTGCCACTCCTCTGAGTTTGGTGTTCTTCAAGATATTCCAGCTTCAATTCGTGCCAAGATATCCCAGAATTTGTACGAGCCATACATTAAGGAAGTCTCTCTTTTCAAAGGTTGCTCTCAGGGATTCATAAAACGAATTGCAACCAAAGTTCGTGAAGAGGCTTTTTTCCCTGGACAAATGATTATTGAACGTGAAAACTTAGTTGACCAACTCTATGTTGTATGTCATGGTGAATTGGAGGAAGTTGAAAACTGGGATACTGAAGATGAAGAGTTAATTAGGGGTCTTGGAACATATAGCTCATTTGGTGAAATTTCTTTCCTTTGCAATTCTCCTCATCCCTACCATGTTCGGGTTCGTGAGTTTTCCAAGATCTTGCAACTCGATAAACTGTCATTTAAAGAAACCTTGGAATTACACTTTTTAGATGGACAGATCATCTTAGACAATGCCCTTGAGTTTTCTACTTTTTTTGGGAGATGCTCTGGTCATGGAAATCCAGGAAGCAATCCACCGATTTACAAGTTAGTTTTGTTCCTCCTCTTTTGTTTGGTGATAACCAGGCTGCAGTATACAGAAACAATTTCAACTGTCAACTGTGCTGCTCATGATGGGGATCTAAATCAACTCAAACGGTTGATTAAAGCAGGAGCAGATCCCAATAAAACAGATTATGATGGAAGATCGCCTCTGCATTTTGCTGCATCGAAAGGATATGAAGCTATTGTTTGTTTTCTTATTGAACAAGGAGCAAAAGTTAATGTTCCAGATAAGTTTAGGAACATGCCTTTACTTGAAGCCATTCAGAATGGACATGAGCAAGTAGCTTCTTTACTTGCCAAAGCTGGAGCAACCATTGTTGCTAATGATGCTGGTGGACTTCTTTGTTCTACTGTCGCAAGAAGGGGTTTGGGTTTTCTGAAAGGACTTCTGGCTAATGGCATTGATCCAAATGCTAGAAACTATGATCAACGGACTCCACTTCACATAGCTGTCTCAGAAGGTTTGTATCCTTTTGCAGAGGTACTTTTAAATGCTGGAGCCAGTGTTTTTGCAACGGACAGATGGGGAAATACTCCGCTTGATGAAGCTCGTACCAGAGGAAATAAGAATTTGATCAGGCTACTTGAAGTTGCAAGAATTTTTCAGTTATCTGAAAACAACTCTGATATATCCGAAGAGATTCAAGGTACTAATTGA 2271 39.37 MEEDFSKQKLELDDYNDNGDFKSSWWKRKLTLLNLDSSTRNGERSRDAGKNNSANFRSLSQIVIHPHNWRYVLWTHFILVWAVYSSFFTPLEFGFFRGLPKNLFLLDVAGQIAFLIDIAVHFCVAYRDSHSYRFVYDRNLIAIRYLKSRFVVDLMGCMPWDAIYKASGKKELVRYLLWIRLSRALRVTEFFEKLEKDIRINYLGTRIAKLFVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKLGDYSYSNFREIDLWKRYITSLYFAVVTMATVGYGDIHAVNVREMIFIMIFVSFDMILGSYLLGNMAALIVKGSKTEKFRDKMKDVIKYVNKNKLNRKLSKDIKDHLQLQYCHSSEFGVLQDIPASIRAKISQNLYEPYIKEVSLFKGCSQGFIKRIATKVREEAFFPGQMIIERENLVDQLYVVCHGELEEVENWDTEDEELIRGLGTYSSFGEISFLCNSPHPYHVRVREFSKILQLDKLSFKETLELHFLDGQIILDNALEFSTFFGRCSGHGNPGSNPPIYKLVLFLLFCLVITRLQYTETISTVNCAAHDGDLNQLKRLIKAGADPNKTDYDGRSPLHFAASKGYEAIVCFLIEQGAKVNVPDKFRNMPLLEAIQNGHEQVASLLAKAGATIVANDAGGLLCSTVARRGLGFLKGLLANGIDPNARNYDQRTPLHIAVSEGLYPFAEVLLNAGASVFATDRWGNTPLDEARTRGNKNLIRLLEVARIFQLSENNSDISEEIQGTN 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6011252 6038301 - CmaCh06G009140.1 Cma06g00914 296468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00914 756 ProSiteProfiles cAMP/cGMP binding motif profile. 391 494 IPR000595 -
Cma06g00914 756 CDD CAP_ED 391 505 IPR000595 -
Cma06g00914 756 PANTHER POTASSIUM CHANNEL AKT1 67 748 IPR045319 GO:0005249|GO:0006813
Cma06g00914 756 SUPERFAMILY Voltage-gated potassium channels 66 317 - -
Cma06g00914 756 Pfam Ankyrin repeats (many copies) 667 721 IPR002110 GO:0005515
Cma06g00914 756 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Cma06g00914 756 Pfam Cyclic nucleotide-binding domain 412 495 IPR000595 -
Cma06g00914 756 Pfam Ion transport protein 73 314 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma06g00914 756 PRINTS EAG/ELK/ERG potassium channel family signature 216 226 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma06g00914 756 PRINTS EAG/ELK/ERG potassium channel family signature 107 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma06g00914 756 PRINTS EAG/ELK/ERG potassium channel family signature 264 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma06g00914 756 PRINTS EAG/ELK/ERG potassium channel family signature 308 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma06g00914 756 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Cma06g00914 756 SUPERFAMILY Ankyrin repeat 547 733 IPR036770 -
Cma06g00914 756 Pfam Ankyrin repeats (3 copies) 558 647 IPR002110 GO:0005515
Cma06g00914 756 ProSiteProfiles Ankyrin repeat region circular profile. 583 615 - -
Cma06g00914 756 Gene3D - 545 648 IPR036770 -
Cma06g00914 756 Gene3D - 71 318 - -
Cma06g00914 756 Gene3D Helix hairpin bin 319 377 - -
Cma06g00914 756 SUPERFAMILY cAMP-binding domain-like 320 507 IPR018490 -
Cma06g00914 756 SMART ANK_2a 616 645 IPR002110 GO:0005515
Cma06g00914 756 SMART ANK_2a 583 612 IPR002110 GO:0005515
Cma06g00914 756 SMART ANK_2a 680 709 IPR002110 GO:0005515
Cma06g00914 756 SMART ANK_2a 550 579 IPR002110 GO:0005515
Cma06g00914 756 PANTHER CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED 67 748 - -
Cma06g00914 756 ProSiteProfiles Ankyrin repeat region circular profile. 680 712 - -
Cma06g00914 756 Gene3D - 649 740 IPR036770 -
Cma06g00914 756 Gene3D Jelly Rolls 378 497 IPR014710 -
Cma06g00914 756 SMART cnmp_10 391 512 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00914 Cma-Chr6:6011252 Cma15g00732 Cma-Chr15:3549694 0 dispersed
Cma06g00914 Cma-Chr6:6011252 Cma04g02308 Cma-Chr4:16068494 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00914 K21867 - jre:108993203 951.814