Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00914 | ATGGAAGAAGATTTTTCAAAACAAAAGCTAGAACTCGACGATTACAATGATAACGGAGATTTCAAGTCATCCTGGTGGAAAAGAAAACTAACACTACTGAATCTCGATTCATCAACTAGAAATGGCGAGAGATCGAGAGATGCAGGGAAGAACAATAGCGCAAACTTCAGATCTCTAAGTCAAATTGTCATTCATCCTCATAACTGGCGATACGTTCTTTGGACGCATTTCATTTTGGTATGGGCTGTGTACTCTTCCTTCTTTACGCCACTGGAATTCGGATTCTTCAGGGGTCTCCCCAAGAATCTCTTCCTCCTCGACGTTGCCGGCCAGATCGCCTTTCTCATCGATATCGCTGTTCACTTTTGTGTTGCCTATCGCGATTCGCATTCTTACCGCTTTGTCTACGACCGTAATCTCATCGCTATCAGATATTTGAAGTCTCGATTTGTGGTTGACTTAATGGGTTGTATGCCCTGGGACGCTATCTACAAGGCTTCTGGTAAGAAGGAGCTTGTGAGATATTTACTATGGATTCGGCTAAGTCGAGCCTTAAGAGTTACTGAATTCTTTGAGAAATTGGAGAAGGATATACGAATAAATTACCTCGGTACAAGAATTGCGAAGCTTTTTGTTGTGGAGCTTTATTGTACTCATACAGCTGCCTGTATTTTCTACTATCTTGCTACTACTCTACCTCCGTCAAAAGAAGGGTACACCTGGATAGGAAGCCTAAAGTTGGGGGACTATAGCTATTCAAACTTTAGAGAAATTGATCTTTGGAAGCGTTACATCACATCATTATATTTTGCTGTTGTAACTATGGCAACTGTTGGTTATGGTGACATACATGCAGTCAATGTCAGGGAAATGATTTTTATCATGATTTTTGTCTCCTTTGATATGATTCTTGGTTCTTATTTGCTTGGTAACATGGCAGCATTGATAGTAAAAGGATCAAAAACAGAAAAGTTTAGAGATAAAATGAAGGATGTTATTAAATACGTGAATAAAAATAAGCTCAATAGGAAATTAAGTAAAGACATCAAAGATCATCTTCAATTACAGTACTGCCACTCCTCTGAGTTTGGTGTTCTTCAAGATATTCCAGCTTCAATTCGTGCCAAGATATCCCAGAATTTGTACGAGCCATACATTAAGGAAGTCTCTCTTTTCAAAGGTTGCTCTCAGGGATTCATAAAACGAATTGCAACCAAAGTTCGTGAAGAGGCTTTTTTCCCTGGACAAATGATTATTGAACGTGAAAACTTAGTTGACCAACTCTATGTTGTATGTCATGGTGAATTGGAGGAAGTTGAAAACTGGGATACTGAAGATGAAGAGTTAATTAGGGGTCTTGGAACATATAGCTCATTTGGTGAAATTTCTTTCCTTTGCAATTCTCCTCATCCCTACCATGTTCGGGTTCGTGAGTTTTCCAAGATCTTGCAACTCGATAAACTGTCATTTAAAGAAACCTTGGAATTACACTTTTTAGATGGACAGATCATCTTAGACAATGCCCTTGAGTTTTCTACTTTTTTTGGGAGATGCTCTGGTCATGGAAATCCAGGAAGCAATCCACCGATTTACAAGTTAGTTTTGTTCCTCCTCTTTTGTTTGGTGATAACCAGGCTGCAGTATACAGAAACAATTTCAACTGTCAACTGTGCTGCTCATGATGGGGATCTAAATCAACTCAAACGGTTGATTAAAGCAGGAGCAGATCCCAATAAAACAGATTATGATGGAAGATCGCCTCTGCATTTTGCTGCATCGAAAGGATATGAAGCTATTGTTTGTTTTCTTATTGAACAAGGAGCAAAAGTTAATGTTCCAGATAAGTTTAGGAACATGCCTTTACTTGAAGCCATTCAGAATGGACATGAGCAAGTAGCTTCTTTACTTGCCAAAGCTGGAGCAACCATTGTTGCTAATGATGCTGGTGGACTTCTTTGTTCTACTGTCGCAAGAAGGGGTTTGGGTTTTCTGAAAGGACTTCTGGCTAATGGCATTGATCCAAATGCTAGAAACTATGATCAACGGACTCCACTTCACATAGCTGTCTCAGAAGGTTTGTATCCTTTTGCAGAGGTACTTTTAAATGCTGGAGCCAGTGTTTTTGCAACGGACAGATGGGGAAATACTCCGCTTGATGAAGCTCGTACCAGAGGAAATAAGAATTTGATCAGGCTACTTGAAGTTGCAAGAATTTTTCAGTTATCTGAAAACAACTCTGATATATCCGAAGAGATTCAAGGTACTAATTGA | 2271 | 39.37 | MEEDFSKQKLELDDYNDNGDFKSSWWKRKLTLLNLDSSTRNGERSRDAGKNNSANFRSLSQIVIHPHNWRYVLWTHFILVWAVYSSFFTPLEFGFFRGLPKNLFLLDVAGQIAFLIDIAVHFCVAYRDSHSYRFVYDRNLIAIRYLKSRFVVDLMGCMPWDAIYKASGKKELVRYLLWIRLSRALRVTEFFEKLEKDIRINYLGTRIAKLFVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKLGDYSYSNFREIDLWKRYITSLYFAVVTMATVGYGDIHAVNVREMIFIMIFVSFDMILGSYLLGNMAALIVKGSKTEKFRDKMKDVIKYVNKNKLNRKLSKDIKDHLQLQYCHSSEFGVLQDIPASIRAKISQNLYEPYIKEVSLFKGCSQGFIKRIATKVREEAFFPGQMIIERENLVDQLYVVCHGELEEVENWDTEDEELIRGLGTYSSFGEISFLCNSPHPYHVRVREFSKILQLDKLSFKETLELHFLDGQIILDNALEFSTFFGRCSGHGNPGSNPPIYKLVLFLLFCLVITRLQYTETISTVNCAAHDGDLNQLKRLIKAGADPNKTDYDGRSPLHFAASKGYEAIVCFLIEQGAKVNVPDKFRNMPLLEAIQNGHEQVASLLAKAGATIVANDAGGLLCSTVARRGLGFLKGLLANGIDPNARNYDQRTPLHIAVSEGLYPFAEVLLNAGASVFATDRWGNTPLDEARTRGNKNLIRLLEVARIFQLSENNSDISEEIQGTN | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6011252 | 6038301 | - | CmaCh06G009140.1 | Cma06g00914 | 296468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00914 | 756 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 391 | 494 | IPR000595 | - | |
Cma06g00914 | 756 | CDD | CAP_ED | 391 | 505 | IPR000595 | - | |
Cma06g00914 | 756 | PANTHER | POTASSIUM CHANNEL AKT1 | 67 | 748 | IPR045319 | GO:0005249|GO:0006813 | |
Cma06g00914 | 756 | SUPERFAMILY | Voltage-gated potassium channels | 66 | 317 | - | - | |
Cma06g00914 | 756 | Pfam | Ankyrin repeats (many copies) | 667 | 721 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | ProSiteProfiles | Ankyrin repeat profile. | 680 | 712 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | Pfam | Cyclic nucleotide-binding domain | 412 | 495 | IPR000595 | - | |
Cma06g00914 | 756 | Pfam | Ion transport protein | 73 | 314 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cma06g00914 | 756 | PRINTS | EAG/ELK/ERG potassium channel family signature | 216 | 226 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma06g00914 | 756 | PRINTS | EAG/ELK/ERG potassium channel family signature | 107 | 117 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma06g00914 | 756 | PRINTS | EAG/ELK/ERG potassium channel family signature | 264 | 281 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma06g00914 | 756 | PRINTS | EAG/ELK/ERG potassium channel family signature | 308 | 317 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma06g00914 | 756 | ProSiteProfiles | Ankyrin repeat profile. | 583 | 615 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | SUPERFAMILY | Ankyrin repeat | 547 | 733 | IPR036770 | - | |
Cma06g00914 | 756 | Pfam | Ankyrin repeats (3 copies) | 558 | 647 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | ProSiteProfiles | Ankyrin repeat region circular profile. | 583 | 615 | - | - | |
Cma06g00914 | 756 | Gene3D | - | 545 | 648 | IPR036770 | - | |
Cma06g00914 | 756 | Gene3D | - | 71 | 318 | - | - | |
Cma06g00914 | 756 | Gene3D | Helix hairpin bin | 319 | 377 | - | - | |
Cma06g00914 | 756 | SUPERFAMILY | cAMP-binding domain-like | 320 | 507 | IPR018490 | - | |
Cma06g00914 | 756 | SMART | ANK_2a | 616 | 645 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | SMART | ANK_2a | 583 | 612 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | SMART | ANK_2a | 680 | 709 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | SMART | ANK_2a | 550 | 579 | IPR002110 | GO:0005515 | |
Cma06g00914 | 756 | PANTHER | CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED | 67 | 748 | - | - | |
Cma06g00914 | 756 | ProSiteProfiles | Ankyrin repeat region circular profile. | 680 | 712 | - | - | |
Cma06g00914 | 756 | Gene3D | - | 649 | 740 | IPR036770 | - | |
Cma06g00914 | 756 | Gene3D | Jelly Rolls | 378 | 497 | IPR014710 | - | |
Cma06g00914 | 756 | SMART | cnmp_10 | 391 | 512 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00914 | Cma-Chr6:6011252 | Cma15g00732 | Cma-Chr15:3549694 | 0 | dispersed | |
Cma06g00914 | Cma-Chr6:6011252 | Cma04g02308 | Cma-Chr4:16068494 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00914 | K21867 | - | jre:108993203 | 951.814 |