Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00937 ATGGCCTCAGCCAAGCAAGCTGGCCATTGGTCGAACATGCACTCAGCTAAGGTAAGAGAAGTAGGAAGATCTATTGGACAAGGGTATCAAGATCTAGAATTTACTGTACCTATACGGACAATGAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAACCTAAGCGTGATGCCACATTAAGGGGTAGTAGAAATCTAATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCTGTGGATATGGATCTTATGAGAACAGTTTATGTACCCATAGGGCAGAATAAACCCGATGCCCGGTGCTTGATGAAGAGTTTTTCAGTGAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCAGCTGTTCTCTCCCCTGCAGAAAGCTTAGTTGATGAACCACATGAGTTGGGTGTTTTATCTTCCCCTGTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCCCTCCTTCCCCCAGATTCGGAGGAGAAAGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGGAATGTAAGTCCACACAGTAGCATTGATAGCAGTGGAGTTGTCACAGCTATGAGCGTGGTTAATAGTTGTGGTAGCGCATATCGAAGTGATGGAATGGTTAGTATTGAGAGAAACTGTGAAAGTACGAAAGGAAGCATTAGAGGGGACTCTCTTGAGAGTGCAAAAACAAGTATTAGTCGTGCTAGTGATAGCAGTGGTCTTAGTGATGATAGTAGTTGGAGTAACATTACAGGAAGTGCTAATAAACCCCACAAAGGAAACGATCCTAGATGGAAAGCCATTCTTGCTATTCGAGCTAGAGATGGAATATTAGGCATGAGCCATTTTAAGCTTCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTATCTGTCAGAGCTAAGTGGGACTCGTTGTCATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCCATCAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTACAATTACTTGACCATCCATTTCTGCCGACTTTGTACACCCACTTCGAGACTGACAGGTTTTGCTGTCTAGTAATGGAGTATTGTCCAGGAGGAGACCTGCACACTTTGAGGCAACGACAGCCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTTTATGCAGCAGAGGTTCTACTGGCACTCGAATATCTACACATGCTTGGTGTTGTCTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTCGACCTTTCCCTAAGATGTGCAGTGTCGCCCACCCTGATACGAACCTCATACGATTCCGACCCATCTAAACGAGGATTTTGTGTCCAGCCAGCCTGTATTGAGCCCTCATCAGTTTGCATCCAACCTTCATGCTTTCTTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGAGCTGGGGTTGCAATCTAGTGCCCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCGCGATCCATGTCTTTTGTTGGCACCCACGAGTACCTAGCCCCTGAAATCATTAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCATTCAAGGGATCAGGGAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAGCTGAAGTTCCCAGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTAGAGGTTTACTCGTGAAGGAAGTTCCCAGAGTCTCCAGCAACTAG 1857 46.04 MASAKQAGHWSNMHSAKVREVGRSIGQGYQDLEFTVPIRTMKGKSSFLGQEEPKRDATLRGSRNLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDARCLMKSFSVKGPFLEDLSIRVPAKKPSPAVLSPAESLVDEPHELGVLSSPVSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSVVNSCGSAYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFKLLKRLGCGDIGSVYLSELSGTRCHFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDSDPSKRGFCVQPACIEPSSVCIQPSCFLPRLFPQKSKKKSPKPRSELGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDCAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEVPRVSSN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6329480 6332944 - CmaCh06G009370.1 Cma06g00937 296491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00937 618 Gene3D Transferase(Phosphotransferase) domain 1 380 448 - -
Cma06g00937 618 MobiDBLite consensus disorder prediction 48 62 - -
Cma06g00937 618 MobiDBLite consensus disorder prediction 154 168 - -
Cma06g00937 618 MobiDBLite consensus disorder prediction 44 79 - -
Cma06g00937 618 SMART serkin_6 296 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00937 618 ProSiteProfiles Protein kinase domain profile. 296 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00937 618 MobiDBLite consensus disorder prediction 230 273 - -
Cma06g00937 618 Pfam Protein kinase domain 524 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00937 618 Pfam Protein kinase domain 297 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00937 618 PANTHER FLIPPASE KINASE 1-RELATED 19 611 - -
Cma06g00937 618 Gene3D Transferase(Phosphotransferase) domain 1 523 611 - -
Cma06g00937 618 SUPERFAMILY Protein kinase-like (PK-like) 278 611 IPR011009 -
Cma06g00937 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Cma06g00937 618 Gene3D Phosphorylase Kinase; domain 1 294 379 - -
Cma06g00937 618 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 19 611 - -
Cma06g00937 618 MobiDBLite consensus disorder prediction 230 269 - -
Cma06g00937 618 MobiDBLite consensus disorder prediction 154 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00937 Cma-Chr6:6329480 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma14g02166 Cma-Chr14:14854695 Cma06g00937 Cma-Chr6:6329480 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68646 PF00069 Pkinase 1.20E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00937 - - cmax:111472908 1180.62