Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00946 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGACACGGATACTCACCAAACGCCGTCGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCCACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTCCCTACTAGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAGACCGCTTTTAGAGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAGCAGGCGAAGATGACCCTTCGTTGCATGCAAGCTCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAACTTCTCTGATAGAAAATCCATTTCTCAGTCTAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACACAGAAAAGAGATCGCCCTGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGCGGAGATGATTTAGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAACAGGGGAAGAGCTTCAACTGATCAAAGAGACCCCATCAAAACAGTGGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAGCATACCCTGTTTCCACCACTCACCAGCCACGCCGTCCCCATCTAAAACAAGACCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAACACATCCCAAACACCAAGCTTAAGGTCAAACTATTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGCCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCGAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCAAAAAAACGGCTATCATTCCCAGTTCCTGACCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGCGGGACGTACTTTGGGATGGAACAGCAATCCAACTATTCATCATGCTGCACCGACAGCCTCGGCGGCGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.96 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTPSATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSISQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIALKRDRNLSHAFSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQSIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQANCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6396619 6398703 - CmaCh06G009460.1 Cma06g00946 296500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00946 500 MobiDBLite consensus disorder prediction 1 57 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 297 345 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 419 433 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 190 211 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 480 500 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 407 444 - -
Cma06g00946 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Cma06g00946 500 MobiDBLite consensus disorder prediction 242 371 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 17 44 - -
Cma06g00946 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cma06g00946 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Cma06g00946 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Cma06g00946 500 SMART iq_5 95 117 IPR000048 GO:0005515
Cma06g00946 500 SMART iq_5 118 139 IPR000048 GO:0005515
Cma06g00946 500 PANTHER IQ-DOMAIN 5-RELATED 1 500 - -
Cma06g00946 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 500 - -
Cma06g00946 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cma06g00946 500 MobiDBLite consensus disorder prediction 252 290 - -
Cma06g00946 500 Gene3D - 93 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00946 Cma-Chr6:6396619 Cma17g00507 Cma-Chr17:3326497 0 dispersed
Cma17g00716 Cma-Chr17:5896515 Cma06g00946 Cma-Chr6:6396619 4.50E-33 dispersed
Cma06g00946 Cma-Chr6:6396619 Cma04g02600 Cma-Chr4:17780558 8.98E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00946 - - csv:101221270 672.544