Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00946 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGACACGGATACTCACCAAACGCCGTCGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCCACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTCCCTACTAGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAGACCGCTTTTAGAGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAGCAGGCGAAGATGACCCTTCGTTGCATGCAAGCTCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAACTTCTCTGATAGAAAATCCATTTCTCAGTCTAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACACAGAAAAGAGATCGCCCTGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGCGGAGATGATTTAGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAACAGGGGAAGAGCTTCAACTGATCAAAGAGACCCCATCAAAACAGTGGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAGCATACCCTGTTTCCACCACTCACCAGCCACGCCGTCCCCATCTAAAACAAGACCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAACACATCCCAAACACCAAGCTTAAGGTCAAACTATTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGCCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCGAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCAAAAAAACGGCTATCATTCCCAGTTCCTGACCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGCGGGACGTACTTTGGGATGGAACAGCAATCCAACTATTCATCATGCTGCACCGACAGCCTCGGCGGCGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.96 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTPSATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSISQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIALKRDRNLSHAFSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQSIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQANCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6396619 6398703 - CmaCh06G009460.1 Cma06g00946 296500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00946 500 MobiDBLite consensus disorder prediction 1 57 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 297 345 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 419 433 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 190 211 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 480 500 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 407 444 - -
Cma06g00946 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Cma06g00946 500 MobiDBLite consensus disorder prediction 242 371 - -
Cma06g00946 500 MobiDBLite consensus disorder prediction 17 44 - -
Cma06g00946 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cma06g00946 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Cma06g00946 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Cma06g00946 500 SMART iq_5 95 117 IPR000048 GO:0005515
Cma06g00946 500 SMART iq_5 118 139 IPR000048 GO:0005515
Cma06g00946 500 PANTHER IQ-DOMAIN 5-RELATED 1 500 - -
Cma06g00946 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 500 - -
Cma06g00946 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cma06g00946 500 MobiDBLite consensus disorder prediction 252 290 - -
Cma06g00946 500 Gene3D - 93 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00946 - - - csv:101221270 672.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00946 Cma-Chr6:6396619 Cma17g00507 Cma-Chr17:3326497 0 dispersed
Cma17g00716 Cma-Chr17:5896515 Cma06g00946 Cma-Chr6:6396619 4.50E-33 dispersed
Cma06g00946 Cma-Chr6:6396619 Cma04g02600 Cma-Chr4:17780558 8.98E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00946 Cma_Chr06 FPKM 53.945007 57.614971 48.875031 44.15522 50.24786 60.765858 52.724094 0.690542 0.841099 0.858706