Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00956 ATGATGAATTTCAAGCATTCCCTTTTCTTTGCTGCCCTTCTTTCTCTTTCACTTACCCCTTGTTTTTGCTTCAATCCCAAATCCCTTAATCTCTCCAACTATGACTCCTACGATTCTAATTCCGGCTGGTCCCCGGGCGCCAAACTCCACCATTTTCACAGCACAAAGCAGCGATTCAATCCCATTTTTGTGCTTAATTCTTCATTCAATATGATGAATTTCAAGCATTCCCTTTTCTTTGCTGCCCTTCTTTCTCTTTCACTTACCCCTTGTTTTTGCTTCAATCCCAAATCCCTTAATCTCTCCAACTATGACTCCTACGATTCTAATTCCGGCTGGTCCCCGGGCGTCGCCACCTGGTACGGCAGCCCTGTCGGCGCCGGGAGCGACGGAGGTGCGTGTGGGTACGGAAACGCGGTGGGGGAACCGCCATTCTCGTCGTTGATTGCGGCGGGAGGCCCTTCCTTGTTCAAATCCGGCAAGGGCTGTGGAGCTTGTTATCAAGTGAAGTGCTCGGTAAAGGGCGCGTGCTCCCGGAATCCGGTGACGGTGGTTATAACTGACAGTTGTCCTGGCGGTTCCTGTGCTTCCGACGCTGTCCATTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCTTCTCGTCGTGGCGATGAGCTCCGCAATCTTGGCGTACTACAGGTTCAATATAAAAGGGTGGAATGCAAATATGGTGGAACGTCGATCCAGTTCGTGGTGGATGCAGGGTCGAACCCAAACTATTTTGCAGCTTTGATCGAATACCAAAATGGAGATGGAGTTCTTGGTTCAGTGGAGTTGAAACAAGCGCAGGGCTCGGGTTCATGGATTCCCATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTATGGCTCCGCCCTTAAGGCTCCCTTCTCTTTCAGGCTCACTGCCCTGGAATCCAGGAAAGCCGTGGTGGCTAACAACGTGATTCCGGCAGGGTGGCAGCCGGGGAAGACTTATAGATCAGTGGTCAACTTCAAGGGTTAG 1032 51.45 MMNFKHSLFFAALLSLSLTPCFCFNPKSLNLSNYDSYDSNSGWSPGAKLHHFHSTKQRFNPIFVLNSSFNMMNFKHSLFFAALLSLSLTPCFCFNPKSLNLSNYDSYDSNSGWSPGVATWYGSPVGAGSDGGACGYGNAVGEPPFSSLIAAGGPSLFKSGKGCGACYQVKCSVKGACSRNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAASRRGDELRNLGVLQVQYKRVECKYGGTSIQFVVDAGSNPNYFAALIEYQNGDGVLGSVELKQAQGSGSWIPMKQSWGAVWKLDYGSALKAPFSFRLTALESRKAVVANNVIPAGWQPGKTYRSVVNFKG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6481885 6484154 - CmaCh06G009560.1 Cma06g00956 296510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00956 343 Pfam Lytic transglycolase 150 231 IPR009009 -
Cma06g00956 343 PANTHER EXPANSIN-B3 79 342 - -
Cma06g00956 343 Gene3D - 238 342 IPR036749 -
Cma06g00956 343 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 254 337 IPR007117 -
Cma06g00956 343 SMART dpbb_1 149 231 IPR007112 -
Cma06g00956 343 PANTHER EXPANSIN-B2-RELATED 79 342 - -
Cma06g00956 343 Pfam Expansin C-terminal domain 243 326 IPR007117 -
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 153 171 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 112 127 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 283 297 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 224 240 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Expansin/Lol pI family signature 323 337 IPR007118 GO:0005576
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 245 260 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 292 309 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 151 162 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 213 228 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 PRINTS Major pollen allergen Lol pI signature 261 276 IPR005795 GO:0005576|GO:0019953
Cma06g00956 343 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 131 241 IPR007112 -
Cma06g00956 343 SUPERFAMILY Barwin-like endoglucanases 112 261 IPR036908 -
Cma06g00956 343 Gene3D - 97 237 IPR036908 -
Cma06g00956 343 SUPERFAMILY PHL pollen allergen 242 337 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00104 Cma-Chr2:537137 Cma06g00956 Cma-Chr6:6481885 4.40E-78 dispersed
Cma06g00956 Cma-Chr6:6481885 Cma20g00193 Cma-Chr20:916333 4.66E-78 dispersed
Cma14g02155 Cma-Chr14:14770870 Cma06g00956 Cma-Chr6:6481885 3.68E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00956 - - cpep:111800083 526.939