Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00973 ATGCGAAAGCAACCATCATTTGCAGCTCTTCCTCTGTCGCAACAAGCCATGGAAATGGACACATCTCTGGCAACAGAAAACAGAGCGCCTCTGAGGAAGAAGATAAGAGCCACCATAATATGTTCAGAGGAGTTCGAAAACGAAACTGGGGCAAATGGGTTTCCGAGATTCGAGAGCCACCATAATATGTTCAGAGGAGTTCGAAAACGAAACTGGGGCAAATGGGTTTCCGAGATTCGGGAGCCAAGAAAGAAGACCAGGATTTGGCTTGGAACTTACCCAACCGCCGAAATGGCAGCGCGAGCCCACGACGCCGCCGCGCTGGCCATAAAGGGTCACTCTGCATTTCTCAATTTCCCTGAATTGGCTCGGTTCCTTCCTCGCCCACTCTCCAAGTCCCATAAGGACATTCAGGCCGCGGCGGCGCAGGCGGCTGCCACCACATTTTCGGAGCGAAACAACCGTGAGGATGAAGGAAGGGAAGCGGCGGAGAACATGGAGACTCTGTTTTCTGGTAGCGACGGCGGAGAAAGAGCAGAGGACTCCACGAACTCCCCGTCGACGGCCGCCAGTGATGAGACATTATTCGATTTGCCCGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTGTCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTTTCCGGCTGGAAGAGCCTTCGTTTTGGGAGCCCATTTAA 726 52.48 MRKQPSFAALPLSQQAMEMDTSLATENRAPLRKKIRATIICSEEFENETGANGFPRFESHHNMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTAEMAARAHDAAALAIKGHSAFLNFPELARFLPRPLSKSHKDIQAAAAQAAATTFSERNNREDEGREAAENMETLFSGSDGGERAEDSTNSPSTAASDETLFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGFRLEEPSFWEPI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6604162 6604887 - CmaCh06G009730.1 Cma06g00973 296527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00973 241 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Cma06g00973 241 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Cma06g00973 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 239 - -
Cma06g00973 241 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 MobiDBLite consensus disorder prediction 169 192 - -
Cma06g00973 241 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Cma06g00973 241 PANTHER ETHYLENE RESPONSE FACTOR 31 239 - -
Cma06g00973 241 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00973 Cma-Chr6:6604162 Cma05g00594 Cma-Chr5:2958701 1.22E-39 dispersed
Cma14g02148 Cma-Chr14:14707804 Cma06g00973 Cma-Chr6:6604162 1.26E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35239 PF00847 AP2 1.70E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00973 - - cmos:111449118 357.836