Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00973 | ATGCGAAAGCAACCATCATTTGCAGCTCTTCCTCTGTCGCAACAAGCCATGGAAATGGACACATCTCTGGCAACAGAAAACAGAGCGCCTCTGAGGAAGAAGATAAGAGCCACCATAATATGTTCAGAGGAGTTCGAAAACGAAACTGGGGCAAATGGGTTTCCGAGATTCGAGAGCCACCATAATATGTTCAGAGGAGTTCGAAAACGAAACTGGGGCAAATGGGTTTCCGAGATTCGGGAGCCAAGAAAGAAGACCAGGATTTGGCTTGGAACTTACCCAACCGCCGAAATGGCAGCGCGAGCCCACGACGCCGCCGCGCTGGCCATAAAGGGTCACTCTGCATTTCTCAATTTCCCTGAATTGGCTCGGTTCCTTCCTCGCCCACTCTCCAAGTCCCATAAGGACATTCAGGCCGCGGCGGCGCAGGCGGCTGCCACCACATTTTCGGAGCGAAACAACCGTGAGGATGAAGGAAGGGAAGCGGCGGAGAACATGGAGACTCTGTTTTCTGGTAGCGACGGCGGAGAAAGAGCAGAGGACTCCACGAACTCCCCGTCGACGGCCGCCAGTGATGAGACATTATTCGATTTGCCCGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTGTCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTTTCCGGCTGGAAGAGCCTTCGTTTTGGGAGCCCATTTAA | 726 | 52.48 | MRKQPSFAALPLSQQAMEMDTSLATENRAPLRKKIRATIICSEEFENETGANGFPRFESHHNMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTAEMAARAHDAAALAIKGHSAFLNFPELARFLPRPLSKSHKDIQAAAAQAAATTFSERNNREDEGREAAENMETLFSGSDGGERAEDSTNSPSTAASDETLFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGFRLEEPSFWEPI | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6604162 | 6604887 | - | CmaCh06G009730.1 | Cma06g00973 | 296527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00973 | 241 | SUPERFAMILY | DNA-binding domain | 63 | 121 | IPR016177 | GO:0003677 | |
Cma06g00973 | 241 | Pfam | AP2 domain | 64 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | Gene3D | AP2/ERF domain | 63 | 121 | IPR036955 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 31 | 239 | - | - | |
Cma06g00973 | 241 | CDD | AP2 | 64 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | MobiDBLite | consensus disorder prediction | 169 | 192 | - | - | |
Cma06g00973 | 241 | PRINTS | Ethylene responsive element binding protein signature | 86 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | PRINTS | Ethylene responsive element binding protein signature | 64 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | ProSiteProfiles | AP2/ERF domain profile. | 63 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | SMART | rav1_2 | 63 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cma06g00973 | 241 | PANTHER | ETHYLENE RESPONSE FACTOR | 31 | 239 | - | - | |
Cma06g00973 | 241 | MobiDBLite | consensus disorder prediction | 177 | 192 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00973 | Cma-Chr6:6604162 | Cma05g00594 | Cma-Chr5:2958701 | 1.22E-39 | dispersed | |
Cma14g02148 | Cma-Chr14:14707804 | Cma06g00973 | Cma-Chr6:6604162 | 1.26E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35239 | PF00847 | AP2 | 1.70E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00973 | - | - | cmos:111449118 | 357.836 |