Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00994 ATGAGCGTGAAAACCCCGGCGACGAGGACTCGCGTTGGCAAGTACGAGCTCGGTAAAACCCTTGGCGAGGGCTCTTTTGCGAAGGTCAAGTTCGCCAAGAACATTGAGAATGGTGATTGTGTCGCCATCAAGATTCTTGATCGCGAACAAGTCCTTCGACACAAGATGGTCGAACAGATAAAAAGAGAGATATCGACTTTGAAAGTGATTAAGCATCCAAATGTCGTTCAGATTTATGAGGTTATGGCAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTAGAGGGAGGCGAGCTCTTTGACCAAATTGCTACAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAGCTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTCAACTCGCATGGTGTTCTTAAAGTATCAGATTTCGGATTGAGTGCACTTTCGCAGCAAGTTCATGTGTCTGTTTCATATAATATCAAGGGATCACCAACACTATTATTGCAGGGTGATGGTCTTCTTCACACTGCCTGTGGGACTCCAAACTATGTAGCGCCCGAGGTCTTCCATGATAAAGGTTATGATGGTCAATCATCTGATATTTGGTCGTGTGGGGTTATTCTCTTCGTTCTTATGGCAGGCTTCTTGCCTTTCAGCGAGTCAAATCTAACGGTCGTGTGGGGCTTCTTGCCTTTCAGCGAGTCAAATCTAACGCATTTGTATCGAAAAATTTCCAGGGCTGATTTCTGCTTTCCGTCATGGTTCTCAAATGGTGCTAGAAAACTAGTTCGTCGCATTCTCGATCCAAACCCTCTTACTCGAATAACAATAGCCGAAATTCAAGAAGATGAATGGTTCAAGAAGGGCTACACACCCACCCAATTTGAAGTGGAAGAGGATATAACTCTCGATGATGTCAATGCTGCTTTTAGCAGCTCGAGGGAACATCTTTTGACCGAAAAGAAAGAGAAACCGGTGTTTATGAATGCTTTTGAGCTTATATCTAGGTCTCCAGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCAGTTTACTTCACAGAGCCCTGCAAATGAGATCATGTCGAAGATTGAAGAAACTGCAAAACCTATGGGGTTCAATATTAAAAAACGGGACTACAAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTCGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTCCGAAAAACTGGTGGCGATACGCTCGAGCACCACGACTGGATGGCATGCACCGTCCCCAAATTATGGGTCAACATCGGAGTA 1443 44.77 MSVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNIENGDCVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVVQIYEVMASKSKIYIVLEFVEGGELFDQIATKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLNSHGVLKVSDFGLSALSQQVHVSVSYNIKGSPTLLLQGDGLLHTACGTPNYVAPEVFHDKGYDGQSSDIWSCGVILFVLMAGFLPFSESNLTVVWGFLPFSESNLTHLYRKISRADFCFPSWFSNGARKLVRRILDPNPLTRITIAEIQEDEWFKKGYTPTQFEVEEDITLDDVNAAFSSSREHLLTEKKEKPVFMNAFELISRSPGFSLENLFEKQKAVAKRETQFTSQSPANEIMSKIEETAKPMGFNIKKRDYKMKLQGDKTGRKGHLSIATEMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEHHDWMACTVPKLWVNIGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6719204 6725743 + CmaCh06G009940.1 Cma06g00994 296548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00994 481 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cma06g00994 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cma06g00994 481 ProSiteProfiles Protein kinase domain profile. 15 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00994 481 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 240 - -
Cma06g00994 481 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 423 467 - -
Cma06g00994 481 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 240 423 - -
Cma06g00994 481 Gene3D Kinase associated domain 1, KA1 336 421 - -
Cma06g00994 481 Gene3D Kinase associated domain 1, KA1 422 476 - -
Cma06g00994 481 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cma06g00994 481 PANTHER - 423 467 - -
Cma06g00994 481 PANTHER - 240 423 - -
Cma06g00994 481 Pfam Protein kinase domain 15 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00994 481 ProSiteProfiles NAF domain profile. 337 361 IPR018451 GO:0007165
Cma06g00994 481 Pfam NAF domain 339 399 IPR004041 GO:0007165
Cma06g00994 481 SUPERFAMILY Protein kinase-like (PK-like) 12 327 IPR011009 -
Cma06g00994 481 PANTHER - 7 240 - -
Cma06g00994 481 CDD CIPK_C 343 468 - -
Cma06g00994 481 SMART serkin_6 15 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00994 481 Gene3D Transferase(Phosphotransferase) domain 1 95 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00994 Cma-Chr6:6719204 Cma13g00516 Cma-Chr13:5462466 0 dispersed
Cma14g02137 Cma-Chr14:14655135 Cma06g00994 Cma-Chr6:6719204 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68647 PF00069 Pkinase 8.80E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00994 - - csv:101203531 711.064