Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01001 ATGGGCGGGAGCGACGACGAGTTATGTCTCAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCGAGTTACATCCACAGGCCTTCCAACTCCATGATTAATCACCTCCGTAGGAGCTCTTGGAAAGATGCGTTTCAAGTTTCTGATCGAAACGTCGATTCGAGGTCGTTTCTTAGGGGAATCGATGTGAATAGGCTGAGGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGGTTTCTAGTATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGTTGGAGATGAGGCGGAGGCCGAGAGAACCTCGTGCTCGCGAGGGAGCGACGATGAAGACGGCGGCGATGGTGATGGCGACGCCTCGAGAAAGAAGCTCAGGTTATCAAAGGAACAGTCGTTGGTTCTTGAGGAGACGTTCAAAGAGCACAACACGCTCAATGCTCAGAAGCAAAAGCTGGCTCTTGCAAAACGGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAGGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGGGCACTCAAGCTTTCTCCGCAGCTCTATATGCACATGAACCCTCCTACCACTCTCACTATGTGCCCGCAGTGTGAGCGTGTGGCTGTTTCCTCGTTCTCGTCGACATCAGCTGCTTCGACTCACCATCCAGTAGCAGCTGGTATGCAGCAGCGGCCCTTGATGCCCATCGCCCCGCAGGCGGTGTTGCCGATCCAACGTTGA 846 52.72 MGGSDDELCLSLSLGFGVTTQPSYIHRPSNSMINHLRRSSWKDAFQVSDRNVDSRSFLRGIDVNRLRTAVDGEEENGVSSPNSTVSSISGKRSEREAVGDEAEAERTSCSRGSDDEDGGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNAQKQKLALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSFSSTSAASTHHPVAAGMQQRPLMPIAPQAVLPIQR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6777916 6780184 - CmaCh06G010010.1 Cma06g01001 296555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01001 281 Coils Coil 190 220 - -
Cma06g01001 281 CDD homeodomain 127 185 IPR001356 GO:0003677
Cma06g01001 281 Gene3D - 112 188 - -
Cma06g01001 281 MobiDBLite consensus disorder prediction 93 129 - -
Cma06g01001 281 SUPERFAMILY Homeodomain-like 112 185 IPR009057 -
Cma06g01001 281 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Cma06g01001 281 MobiDBLite consensus disorder prediction 75 91 - -
Cma06g01001 281 MobiDBLite consensus disorder prediction 71 129 - -
Cma06g01001 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 276 - -
Cma06g01001 281 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Cma06g01001 281 SMART HOX_1 125 188 IPR001356 GO:0003677
Cma06g01001 281 ProSiteProfiles 'Homeobox' domain profile. 123 184 IPR001356 GO:0003677
Cma06g01001 281 PANTHER - 3 276 - -
Cma06g01001 281 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Cma06g01001 281 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Cma06g01001 281 Pfam Homeodomain 127 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01001 Cma-Chr6:6777916 Cma16g01122 Cma-Chr16:8618431 3.39E-98 dispersed
Cma14g02146 Cma-Chr14:14697711 Cma06g01001 Cma-Chr6:6777916 3.34E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35240 PF04618 HD-ZIP_N 2.90E-27 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01001 K09338 - csv:101222132 408.297