Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01013 ATGAAGATTGAAGATGGGTTGCGGGGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGTACTCGTGCTTTTAATTACATGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTTGCGGATCTGGTAGAGACACCCAACGCTTCTAATTTTTGTTGGAATTATGCAATTTTCTGGCAACTTTCCCATTCAAAATCTGGTCAATGGGTTTTGGGATGGGGAGATGGATCGTTTAGGGATCCTAGGGACGGTGAGGGAACAGAAGCTACGCAGATTCTTAGCCTTGAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGGGCATTGCAGAAGCTTCATACACTGTTTGGTGGGTCTGATGAGGATAATTATGCTCTTGGATTGGATAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCCTTTCCTGGTGGAGAGGGGGGTCCTGGGAAGTGTTTCGCTTCTGGGAAACATGTCTGGCACTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGGTCCTATCTGGCTAAGTCTGCTGGTATTCGGACCATCGTCTTGGTGCCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTGGTTCATTTGATTCGATCGTTGTTTTCATCTCAACGTTCGCTTGATGGAGTGAGGACATTGGCTGTGATGTCGAGGATGGCTGAAAGGAAGGATGAAAACGCCCTGTTTCCAAGTTTGGGGATTGCAGAAAGAGGAGGAGGGGTTCCTAAGGTTTTTGGGCAGAGTTTGAACTCGGGGAACGTGGGTCGATCTCATTTCAGAGAGAAACTGGCGGTTAGGAAGATGGACGAAAGGGCATGGGAAGTATGTCCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAAGGGCGTTCGAAGTCCGAGTTTGGGGCATGTTCATCTTCTCAAACAGGGGAATCCTACCGAAACTTTAGGCTCTCCAACTCCACCGGTAAATAATAATCACGAGCAGCTTGTCAATGGAGTTAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGATAGCCCAAATGCAAATTGATTTCTCTGTAGCAACATCAAGGCCGACTCCTGTGATGAACCGTGTAGTTGCAGATTCGGAACAATTAGATGTAGAGCCTCAATGCAAAGAAGAGGGACCTGGCACTGACGAAAGACGACCACGCAAACGAGGCAGAAAACCTGCAAATGGCAGGGAGGAACCACTAAATCACGTGGAGGCGGAGAGGCAACGTCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTACCCAATATCTCGAAGATGGACAAAGCTTCACTGCTAGGAGATGCCATTGCTTACATTAATGAGCTTCAATCTAAAGTGAAAGCCATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACAAAGGAAGAGTTGATAGCCACAATTTCGCGGGATTCGACTCCATTACATCCTCTATCAACAGTTGGGTAG 1851 45.65 MKIEDGLRGVGGKDEDKTVVAAVLGTRAFNYMMSCSVSNENLFMAVRNDDNLQNKLADLVETPNASNFCWNYAIFWQLSHSKSGQWVLGWGDGSFRDPRDGEGTEATQILSLELEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPGGEGGPGKCFASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVSESLELVHLIRSLFSSQRSLDGVRTLAVMSRMAERKDENALFPSLGIAERGGGVPKVFGQSLNSGNVGRSHFREKLAVRKMDERAWEVCPNGGRIQFQSPRKGVRSPSLGHVHLLKQGNPTETLGSPTPPVNNNHEQLVNGVRDEFCLNPYQSQKIAQMQIDFSVATSRPTPVMNRVVADSEQLDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQSKVKAMEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLTKEELIATISRDSTPLHPLSTVG 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6850415 6852265 + CmaCh06G010130.1 Cma06g01013 296567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01013 616 MobiDBLite consensus disorder prediction 411 451 - -
Cma06g01013 616 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cma06g01013 616 Gene3D - 433 504 IPR036638 GO:0046983
Cma06g01013 616 PANTHER TRANSCRIPTION FACTOR MTB1 13 610 - -
Cma06g01013 616 CDD bHLH_AtAIB_like 437 510 - -
Cma06g01013 616 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 443 504 IPR036638 GO:0046983
Cma06g01013 616 MobiDBLite consensus disorder prediction 406 451 - -
Cma06g01013 616 Pfam Helix-loop-helix DNA-binding domain 444 490 IPR011598 GO:0046983
Cma06g01013 616 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 440 489 IPR011598 GO:0046983
Cma06g01013 616 PANTHER MYC 13 610 IPR045084 GO:0003700|GO:0006355
Cma06g01013 616 SMART finulus 446 495 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01013 Cma14g02113 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01013 Cma-Chr6:6850415 Cma14g02113 Cma-Chr14:14573817 0 dispersed
Cma06g01013 Cma-Chr6:6850415 Cma19g00070 Cma-Chr19:402667 1.72E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35241 PF14215 bHLH-MYC_N 2.40E-52 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01013 - - csv:101208845 1038.48